Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10930.1 | KRH25249 | AT3G03000.1 | 21798944 |
| AT4G10930.1 | KRH30413 | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH41328 | Soybean | nucleus | 87.68 | 88.56 |
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 8.26 | 88.52 |
| VIT_02s0025g01650.t01 | Wine grape | nucleus | 45.14 | 46.02 |
| Solyc12g055910.1.1 | Tomato | nucleus | 40.55 | 43.3 |
| CDX90783 | Canola | nucleus | 35.35 | 40.28 |
| CDY05126 | Canola | nucleus | 35.04 | 40.18 |
| Bra000729.1-P | Field mustard | nucleus | 35.35 | 39.02 |
| AT4G10930.1 | Thale cress | nucleus | 35.27 | 38.97 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 33.66 | 33.03 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 30.3 | 30.91 |
| OQU84317 | Sorghum | nucleus | 29.61 | 30.91 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 30.76 | 30.71 |
| Os12t0209700-01 | Rice | nucleus | 13.16 | 30.61 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 30.45 | 30.13 |
| Zm00001d053989_P003 | Maize | plastid | 30.22 | 30.11 |
| KRG98787 | Soybean | cytosol | 6.58 | 24.71 |
| KRH56752 | Soybean | nucleus | 4.06 | 13.52 |
| KRH03187 | Soybean | nucleus | 5.89 | 12.6 |
| KRH38612 | Soybean | cytosol, nucleus, plastid | 2.37 | 12.3 |
| KRH33855 | Soybean | nucleus | 5.66 | 9.37 |
| KRG92939 | Soybean | nucleus | 5.89 | 8.97 |
Protein Annotations
| EntrezGene:100808102 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02003347 | ncoils:Coil | EnsemblPlantsGene:GLYMA_05G217800 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| UniProt:K7KRW1 | EnsemblPlants:KRH60053 | ProteinID:KRH60053 | ProteinID:KRH60053.1 | ProteinID:KRH60054.1 | ProteinID:KRH60055.1 |
| ProteinID:KRH60056.1 | PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF76 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 |
| UniParc:UPI00023396BD | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:39780508..39790803
Molecular Weight (calculated)
144205.0 Da
IEP (calculated)
4.762
GRAVY (calculated)
-0.650
Length
1307 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEADFVTSDM LTLTQDAFYA NDNDDVAVEG ERCGICMDMV IDRGLLDCCQ HWFCFVCIDN WATITNLCPL CQNEFQLITC VPVYDTIGNN KVEDDSFFRD
0101: DDWSIEEKNN TLSFPSYYID ENAVICLDGD GCKVRNGLAT IEGDSDLDTS IACDSCDIWY HAFCVGFDTE GTSDSTWLCP RCVADEVSKG TSNSVERTTV
0201: ECNADNRNSN SECHAEDSFS GKVSVSVADT GETAVVVSMV DQTIWVPATS EKSLLSFEVG GYPMTESCIL MSDTNGQQSG EVKTETNTLR IMEEEELELS
0301: LSNNISCSIT SKSLVHNDLK KSVSGARDDP SGFDGTKLFN ESLTKTSPSR IESEMGLQLG LSVGSFLSVD SADKNETKDQ ATDVLCLSSE ECFLKGDEIE
0401: ANACKDNARV AGGKRKHTDY SDEQVYIKAD DGDVKPELPE EDDKPELPDE IGQKKIRATG SQMTSTNDSA DAHPLENAQK CPALKHSPTK AIVKSNIMNI
0501: VKGTNRRQSK GRTDTNACDK LSENKGNMAG LRVKKIMKRV SDDGESSLVV QNLRQEIREA VRNKSSINFE DNHFDPKLLE AFRAAITGPK TELVNKLSPA
0601: AIKAKKSMLQ KGKVRENLTK KIFGTSNGRR KRAWDRDCEI EFWKYRCMRA TKPEKIETLK SVLDLLRKGS DSPESKQASE CQAKNPILSR LYLADTSVFP
0701: RKEDVKPLSV LKTIANSEQT KHNNPSDKAP NLFVDNNTKA TNVYNLLSKN SVCSSEKKVD KKLVHGPVGD NSTSGKVRSN NHSERTSVSS AGAKTSTKEL
0801: GLKLGCMKSD KRKWALEVLA RKTAATSRNT ANGNQEDNAV FKGNYPLLAQ LPIDMRPVLA PCRHNKIPIS VRQAQLYRLT ERLLRNTNLA VIRRTADTEL
0901: AVADAVNIEK EVADRSNSKL VYLNLSSQEL LHRTNNTKTN VATDTSPPAS SAMLTDQQSE LNTDDLSTDP EVETALKNAG LLSDSPPSSP HESRETCNSD
1001: MSGPDNILEL DSHPDLDIYG DFEYDLEDED YIGASVTKVS NPKQEQNESK VKLVFSTMNL KKSDIALDCA DWEGSERIEV PGDASCSPNC HNDAVLRDRA
1101: STIDEEMGQP SVSSELLPCE AAVEPPDSEF EELYGPDKEP LIKKFPVSES RSLLGDGKTE NLSVANDCHN DETEVLDDAV NASELENENL TEKVSVTTIT
1201: DKSSNVSEGG ENSQKKEEKS NVIAKQTDSV NHVTKRVEAY IKEHIRPLCK SGVITADQYK WAVAKTTEKV MKYHSKAKNA NFLIKEGEKV KKLAEQYAEA
1301: AQQNRKN
0101: DDWSIEEKNN TLSFPSYYID ENAVICLDGD GCKVRNGLAT IEGDSDLDTS IACDSCDIWY HAFCVGFDTE GTSDSTWLCP RCVADEVSKG TSNSVERTTV
0201: ECNADNRNSN SECHAEDSFS GKVSVSVADT GETAVVVSMV DQTIWVPATS EKSLLSFEVG GYPMTESCIL MSDTNGQQSG EVKTETNTLR IMEEEELELS
0301: LSNNISCSIT SKSLVHNDLK KSVSGARDDP SGFDGTKLFN ESLTKTSPSR IESEMGLQLG LSVGSFLSVD SADKNETKDQ ATDVLCLSSE ECFLKGDEIE
0401: ANACKDNARV AGGKRKHTDY SDEQVYIKAD DGDVKPELPE EDDKPELPDE IGQKKIRATG SQMTSTNDSA DAHPLENAQK CPALKHSPTK AIVKSNIMNI
0501: VKGTNRRQSK GRTDTNACDK LSENKGNMAG LRVKKIMKRV SDDGESSLVV QNLRQEIREA VRNKSSINFE DNHFDPKLLE AFRAAITGPK TELVNKLSPA
0601: AIKAKKSMLQ KGKVRENLTK KIFGTSNGRR KRAWDRDCEI EFWKYRCMRA TKPEKIETLK SVLDLLRKGS DSPESKQASE CQAKNPILSR LYLADTSVFP
0701: RKEDVKPLSV LKTIANSEQT KHNNPSDKAP NLFVDNNTKA TNVYNLLSKN SVCSSEKKVD KKLVHGPVGD NSTSGKVRSN NHSERTSVSS AGAKTSTKEL
0801: GLKLGCMKSD KRKWALEVLA RKTAATSRNT ANGNQEDNAV FKGNYPLLAQ LPIDMRPVLA PCRHNKIPIS VRQAQLYRLT ERLLRNTNLA VIRRTADTEL
0901: AVADAVNIEK EVADRSNSKL VYLNLSSQEL LHRTNNTKTN VATDTSPPAS SAMLTDQQSE LNTDDLSTDP EVETALKNAG LLSDSPPSSP HESRETCNSD
1001: MSGPDNILEL DSHPDLDIYG DFEYDLEDED YIGASVTKVS NPKQEQNESK VKLVFSTMNL KKSDIALDCA DWEGSERIEV PGDASCSPNC HNDAVLRDRA
1101: STIDEEMGQP SVSSELLPCE AAVEPPDSEF EELYGPDKEP LIKKFPVSES RSLLGDGKTE NLSVANDCHN DETEVLDDAV NASELENENL TEKVSVTTIT
1201: DKSSNVSEGG ENSQKKEEKS NVIAKQTDSV NHVTKRVEAY IKEHIRPLCK SGVITADQYK WAVAKTTEKV MKYHSKAKNA NFLIKEGEKV KKLAEQYAEA
1301: AQQNRKN
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.