Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 5.71 | 62.3 |
| Os12t0209700-01 | Rice | nucleus | 15.32 | 36.3 |
| CDX90783 | Canola | nucleus | 29.65 | 34.44 |
| VIT_02s0025g01650.t01 | Wine grape | nucleus | 32.96 | 34.24 |
| CDY05126 | Canola | nucleus | 29.28 | 34.21 |
| Solyc12g055910.1.1 | Tomato | nucleus | 31.38 | 34.15 |
| KRH41328 | Soybean | nucleus | 33.03 | 34.0 |
| OQU84317 | Sorghum | nucleus | 31.76 | 33.79 |
| KRH60053 | Soybean | nucleus | 33.03 | 33.66 |
| Bra000729.1-P | Field mustard | nucleus | 29.8 | 33.53 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 31.91 | 33.18 |
| AT4G10930.1 | Thale cress | nucleus | 29.13 | 32.8 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 31.98 | 32.54 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 32.21 | 32.48 |
| Zm00001d053989_P003 | Maize | plastid | 31.61 | 32.09 |
| GSMUA_Achr3P10630_001 | Banana | nucleus | 5.93 | 11.69 |
| GSMUA_Achr10P... | Banana | nucleus | 4.35 | 10.23 |
| GSMUA_Achr11P... | Banana | nucleus | 5.71 | 9.77 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | ncoils:Coil | InterPro:EloA-BP1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G31620_001 | EnsemblPlants:GSMUA_Achr3P31620_001 | EnsemblPlants:GSMUA_Achr3T31620_001 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:IPR019787 | UniProt:M0SJH6 | PFAM:PF00628 | PFAM:PF15870 | ScanProsite:PS00518 | PFscan:PS50089 |
| PANTHER:PTHR22937 | PANTHER:PTHR22937:SF76 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI000296FB35 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G31620_001]
Coordinates
chr3:+:29837607..29854190
Molecular Weight (calculated)
147777.0 Da
IEP (calculated)
4.809
GRAVY (calculated)
-0.522
Length
1332 amino acids
Sequence
(BLAST)
(BLAST)
0001: MYQQETTNGE SKETTFEDED DREDIEFENE RCGICTDVII DRGVLDCCDH WFCFACLDNW ATITNCCPIC QNEFQLITCL PVYDTTGSIR IENYSLSRSL
0101: VIIKINILKP GSCTCFLLFC IVPSLIDCPS KPISYCFAVC LSYILPFSIC REVDWSVQGK NNTLSFPSYY IDEDAVACLD GDGCKVRSGL TTADDGLNFD
0201: TSIACDSCDI WYHAFCVGFS PEYTSVSSWL CPRCLSIEEP QKMDDIPVQD QGWHSILKAA DHGWAVDHSF LGKVSVSVAD DGETALVVSM VQRDQTSKDD
0301: TSASEDLIET NTRKETETSF SESNVDNPKL NVQVDKSGDF KLNCDDLICS NDSVFDGMVA DTDSSYENLL DTSPAMTRED NELNNISSAL TLLESAPSNI
0401: VDSQLSLSHG GPISSSDQPL IHSLLEANHT EETMCNSSRY NDHDDSFSLS YQNIDELRQD KLGELVDVDV KDPLVMSRSL HNPEQCRISV DDIITSSVED
0501: VVNAICQEDF KVTGLVEEHT TESNLHLMDV DSIIKQKGKR KLEFQVKAMT EDNAKKSKSD ETSLMLPSGS QADASIPDDF KSYPKAATIC EDDDTKCNAE
0601: DSALHTDIMS IVREADNKHD GQIGEKHKNN VVGKKDDSTG LRVKKIMRSV GDKAEKEILV QKLGKEIKEA VQVKTSNCNF EDNAFHGKLL TAFREAIVKP
0701: RDEVANKFIP SLRMRKQLLQ KGKVRENLTK KIYATSSGRR RRAWDRDWEI EFWKYRCPKL KPEKIETLQS VLELLKKAST SCMENPEMDQ GPQGDMSNSI
0801: LSRVYLADAS VFPRKDDIKP LSAAAVIGND QKEKSLKAPC KRGSPDSGQI LKEQANVSNM AKNDKRKWAM EILARKNALT SSNSVNDGQE EGNMLKGNYP
0901: LLAQLPSDMR PVVAPSRHNK VPISVRQAQL YRIAEHYLRR TNLSVICRTA DVELAVADAV NVEKDISERS NSKMVYINLC AQVLSQCTRL QSDAGPSDSL
1001: VNTKSSADQA VEKSENCIDR VAKKAISEPK PVVFGDVEEA LRVAGLSDSP PNSPEKNNSK MKGMFSIIGS EEPLKCPNYE SQEPASSTKS LVATNQDDLI
1101: VEVPSNCSTL LQYQNVCGKG NAHVNVEVDV STATKIFQGD EINVLSSTEH NKLHGPEKEP PLDTSSELMG EACKIMEREA AGKSSINNEK EDNSSKDEFA
1201: VPKLEIGNCS KSNILGDKVP FEGRSSGRRN SPNSIMSEIA PKVEQAKPST ADSSDSSHPI YKKVEAYVKE HIRPLCKSGV ITVEQYRWAV TRTTDKVMGH
1301: HCNAKNANFL IKEGDKVKKL AEQYAEVAQQ KM
0101: VIIKINILKP GSCTCFLLFC IVPSLIDCPS KPISYCFAVC LSYILPFSIC REVDWSVQGK NNTLSFPSYY IDEDAVACLD GDGCKVRSGL TTADDGLNFD
0201: TSIACDSCDI WYHAFCVGFS PEYTSVSSWL CPRCLSIEEP QKMDDIPVQD QGWHSILKAA DHGWAVDHSF LGKVSVSVAD DGETALVVSM VQRDQTSKDD
0301: TSASEDLIET NTRKETETSF SESNVDNPKL NVQVDKSGDF KLNCDDLICS NDSVFDGMVA DTDSSYENLL DTSPAMTRED NELNNISSAL TLLESAPSNI
0401: VDSQLSLSHG GPISSSDQPL IHSLLEANHT EETMCNSSRY NDHDDSFSLS YQNIDELRQD KLGELVDVDV KDPLVMSRSL HNPEQCRISV DDIITSSVED
0501: VVNAICQEDF KVTGLVEEHT TESNLHLMDV DSIIKQKGKR KLEFQVKAMT EDNAKKSKSD ETSLMLPSGS QADASIPDDF KSYPKAATIC EDDDTKCNAE
0601: DSALHTDIMS IVREADNKHD GQIGEKHKNN VVGKKDDSTG LRVKKIMRSV GDKAEKEILV QKLGKEIKEA VQVKTSNCNF EDNAFHGKLL TAFREAIVKP
0701: RDEVANKFIP SLRMRKQLLQ KGKVRENLTK KIYATSSGRR RRAWDRDWEI EFWKYRCPKL KPEKIETLQS VLELLKKAST SCMENPEMDQ GPQGDMSNSI
0801: LSRVYLADAS VFPRKDDIKP LSAAAVIGND QKEKSLKAPC KRGSPDSGQI LKEQANVSNM AKNDKRKWAM EILARKNALT SSNSVNDGQE EGNMLKGNYP
0901: LLAQLPSDMR PVVAPSRHNK VPISVRQAQL YRIAEHYLRR TNLSVICRTA DVELAVADAV NVEKDISERS NSKMVYINLC AQVLSQCTRL QSDAGPSDSL
1001: VNTKSSADQA VEKSENCIDR VAKKAISEPK PVVFGDVEEA LRVAGLSDSP PNSPEKNNSK MKGMFSIIGS EEPLKCPNYE SQEPASSTKS LVATNQDDLI
1101: VEVPSNCSTL LQYQNVCGKG NAHVNVEVDV STATKIFQGD EINVLSSTEH NKLHGPEKEP PLDTSSELMG EACKIMEREA AGKSSINNEK EDNSSKDEFA
1201: VPKLEIGNCS KSNILGDKVP FEGRSSGRRN SPNSIMSEIA PKVEQAKPST ADSSDSSHPI YKKVEAYVKE HIRPLCKSGV ITVEQYRWAV TRTTDKVMGH
1301: HCNAKNANFL IKEGDKVKKL AEQYAEVAQQ KM
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKTISNSD VASVISLKRK HSDCSGDDGN SETKPEIYES LNELKLEEEE ELTTVHHESR
0401: SPSNNTTVDI FSIVKGTGRR KNLMRSNPTD KSSEAENAAG LRVKKIKRTP EDEKESMVLV EKLRKEIREA VRNKSMEDIR ENQFDPKLLA AFRAAVAGPK
0501: TGEAPRRSSA LAVKAKKLML QKGKVRENLT KKIYADLNGK RKSAWHRDCE VEFWKHRCIQ GRKPEKIETL KSVLSLLKNK PADTKTNFSS ETPQASNPIL
0601: SRLYLADTSV FPRNDNLKPL LAPKEMGNSQ NNGKPTEASK TLPKISAAKG SSVKAAGSKL NSGNKQSDGQ PNLTSSNSKE MVENPDDLKK DKRKWALQVL
0701: ARKKALAGNN STQDKEGSPE LKGNYPLLAQ LPADMRPSLA TSRHNKVPVA VRQTQLYRLT EHLLKKENLL TIRRSAATEL AVADAINIEK AIADKSSSKV
0801: VYLNLCSQEI LHHSESKTMD NAVEPNSSSP MADSESERIS SKDSDNPAVL EALRAAGLAD SPPNSPTRSV EVLPEKGDSS LDKTRETGPY NVFDMDSVPD
0901: TDIFGDFEYE LDEEDYFGAT MAKKASVMQP DESLTKVKVV LSTVQPGKSL NPSEVVEDEE TTTENLNETT NGKEDGKSFV PMELVPEAEG EGEGEGEGEG
1001: EGEGGGEILS VAECEELYGP GTEKLVERPL IEGFAENGVK AKAPDSECES NTQREFIASN FEITCIQEKK LPRSIQKCKP SEKPSKEEKG KADGFGNSIT
1101: KKVEAYIKEH IRPLCKSGVI NVEQYRWAVT KTTEKVMKYH SKAKSANFLI KEGDKIKKLA EQYVETASSG AHHKDKCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKTISNSD VASVISLKRK HSDCSGDDGN SETKPEIYES LNELKLEEEE ELTTVHHESR
0401: SPSNNTTVDI FSIVKGTGRR KNLMRSNPTD KSSEAENAAG LRVKKIKRTP EDEKESMVLV EKLRKEIREA VRNKSMEDIR ENQFDPKLLA AFRAAVAGPK
0501: TGEAPRRSSA LAVKAKKLML QKGKVRENLT KKIYADLNGK RKSAWHRDCE VEFWKHRCIQ GRKPEKIETL KSVLSLLKNK PADTKTNFSS ETPQASNPIL
0601: SRLYLADTSV FPRNDNLKPL LAPKEMGNSQ NNGKPTEASK TLPKISAAKG SSVKAAGSKL NSGNKQSDGQ PNLTSSNSKE MVENPDDLKK DKRKWALQVL
0701: ARKKALAGNN STQDKEGSPE LKGNYPLLAQ LPADMRPSLA TSRHNKVPVA VRQTQLYRLT EHLLKKENLL TIRRSAATEL AVADAINIEK AIADKSSSKV
0801: VYLNLCSQEI LHHSESKTMD NAVEPNSSSP MADSESERIS SKDSDNPAVL EALRAAGLAD SPPNSPTRSV EVLPEKGDSS LDKTRETGPY NVFDMDSVPD
0901: TDIFGDFEYE LDEEDYFGAT MAKKASVMQP DESLTKVKVV LSTVQPGKSL NPSEVVEDEE TTTENLNETT NGKEDGKSFV PMELVPEAEG EGEGEGEGEG
1001: EGEGGGEILS VAECEELYGP GTEKLVERPL IEGFAENGVK AKAPDSECES NTQREFIASN FEITCIQEKK LPRSIQKCKP SEKPSKEEKG KADGFGNSIT
1101: KKVEAYIKEH IRPLCKSGVI NVEQYRWAVT KTTEKVMKYH SKAKSANFLI KEGDKIKKLA EQYVETASSG AHHKDKCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.