Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 30.77 | 32.1 |
| Solyc06g069360.2.1 | Tomato | nucleus | 29.29 | 30.46 |
| PGSC0003DMT400010393 | Potato | nucleus | 29.14 | 30.31 |
| KRH56752 | Soybean | nucleus | 17.01 | 29.34 |
| KRH03187 | Soybean | nucleus | 26.33 | 29.13 |
| Os06t0283200-01 | Rice | nucleus | 26.78 | 23.72 |
| Zm00001d045755_P001 | Maize | nucleus | 25.44 | 23.47 |
| EER88243 | Sorghum | nucleus | 26.48 | 23.07 |
| TraesCS7B01G119600.1 | Wheat | nucleus | 26.18 | 19.82 |
| TraesCS7D01G214800.1 | Wheat | nucleus | 25.89 | 18.54 |
| TraesCS7A01G212900.1 | Wheat | nucleus | 25.89 | 18.5 |
| GSMUA_Achr11P... | Banana | nucleus | 17.75 | 15.42 |
| GSMUA_Achr10P... | Banana | nucleus | 12.72 | 15.17 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 15.24 | 14.09 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 11.69 | 5.93 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | EnsemblPlantsGene:GSMUA_Achr3G10630_001 |
| EnsemblPlants:GSMUA_Achr3P10630_001 | EnsemblPlants:GSMUA_Achr3T10630_001 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:M0SDI0 |
| PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 |
| PANTHER:PTHR10615:SF132 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI000294EB1A |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G10630_001]
Coordinates
chr3:+:7841577..7847777
Molecular Weight (calculated)
74194.5 Da
IEP (calculated)
7.984
GRAVY (calculated)
-0.657
Length
676 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSGSTGK GKEKMERELT AAAGEGSSAA VEEEEGETCG ICFSDCKRST RGRIDSCDHY FCFVCIMEWA KVESRCPLCK RRFRSIRRPP VDGVFVVERV
101: VDVPVRDQVY HPLGNESVAL SDPYAHVSCS ICHGSQNEEL LLLCDLCDSG SHTYCSGLGT IVPEGDWYCP DCTISRDKHL KSQFDDDCCP QDSVKNVDTT
201: EVPEQSVSIY DIVADEITSN SSRRFSTIDV LDPQSTGCIS PSRNSHHGEN QDSGLQTDQS SSVSTVGKTL CGPAKCIDTG ARTLRNCRNL HDRIQALREN
301: WNSLRAGSLH FSSNFLGAKT NEKRQSLPAR TSPNISRQRT TTSHINREQT SASAYGTTQR DSKSDNFLNS PGKRNVVQDA VNYPSKANVL KGTEKLQSGS
401: SNCNGKSRVG KITLGTGSDD RCFTLYQSQW SQSDFNQTPD AHKVTDLQGP RWKGDLAQQL VSSGTSTRSN FQESMVNPGS VACSQSCVST PPSKKLINFN
501: TSNIEANSKE VNGNKMDGNL TMNNDRAKSN SSSKSKSLDE INLSLPSRER HFDNRKCDLG THVCGSLMKT NGLADNSSKS EIQSLVKLNL KLLSRDQQLG
601: AARFKEVARI ATHTILAACG LEHSKSSARS FPSPVCQHSE QIKQHRKSKL MPSSCRECFY TFVQNVVNSV MTEKNL
101: VDVPVRDQVY HPLGNESVAL SDPYAHVSCS ICHGSQNEEL LLLCDLCDSG SHTYCSGLGT IVPEGDWYCP DCTISRDKHL KSQFDDDCCP QDSVKNVDTT
201: EVPEQSVSIY DIVADEITSN SSRRFSTIDV LDPQSTGCIS PSRNSHHGEN QDSGLQTDQS SSVSTVGKTL CGPAKCIDTG ARTLRNCRNL HDRIQALREN
301: WNSLRAGSLH FSSNFLGAKT NEKRQSLPAR TSPNISRQRT TTSHINREQT SASAYGTTQR DSKSDNFLNS PGKRNVVQDA VNYPSKANVL KGTEKLQSGS
401: SNCNGKSRVG KITLGTGSDD RCFTLYQSQW SQSDFNQTPD AHKVTDLQGP RWKGDLAQQL VSSGTSTRSN FQESMVNPGS VACSQSCVST PPSKKLINFN
501: TSNIEANSKE VNGNKMDGNL TMNNDRAKSN SSSKSKSLDE INLSLPSRER HFDNRKCDLG THVCGSLMKT NGLADNSSKS EIQSLVKLNL KLLSRDQQLG
601: AARFKEVARI ATHTILAACG LEHSKSSARS FPSPVCQHSE QIKQHRKSKL MPSSCRECFY TFVQNVVNSV MTEKNL
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.