Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G212900.1 | Wheat | nucleus | 93.62 | 88.37 |
| TraesCS7D01G214800.1 | Wheat | nucleus | 92.27 | 87.29 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 55.21 | 67.44 |
| Zm00001d045755_P001 | Maize | nucleus | 35.27 | 42.97 |
| EER88243 | Sorghum | nucleus | 35.16 | 40.46 |
| Os06t0283200-01 | Rice | nucleus | 34.38 | 40.24 |
| Solyc06g069360.2.1 | Tomato | nucleus | 20.72 | 28.46 |
| KRH56752 | Soybean | nucleus | 12.43 | 28.32 |
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 20.38 | 28.09 |
| KRH03187 | Soybean | nucleus | 18.81 | 27.5 |
| PGSC0003DMT400010393 | Potato | nucleus | 19.93 | 27.38 |
| GSMUA_Achr3P10630_001 | Banana | nucleus | 19.82 | 26.18 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 10.64 | 10.94 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 13.89 | 10.02 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 12.54 | 8.48 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G119600.1 | EnsemblPlantsGene:TraesCS7B01G119600 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 | PFAM:PF00628 | PFscan:PS50016 | PFscan:PS50089 | ScanProsite:PS00518 |
| SEG:seg | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7B:+:138868610..138874012
Molecular Weight (calculated)
95819.9 Da
IEP (calculated)
8.353
GRAVY (calculated)
-0.612
Length
893 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSAGDGLA PPSSASKGKA RMDDDAEAEA VALAPEGVPC GICFTDSCRA IRGELDCCAH HFCFVCIMAW ARVESRCPFC KARFHTIRRP PVPGRLPSER
101: IVNVAERNQV YHPRGNVSSV VSTDPYVNSG CSVCNCSSDE DLLLLCELCD AASHTYCVGL GTTVPEGDWF CKDCETSKEE HSRCQIEDGG SSDQGEIEIT
201: IEVPTAEAVT EPFASDIVEE GSSLSSVRRT NTRSSGTTIE VPTAEPVTEP SVSDIVDEGY SLSSLRRTNM RSSGTTIEVP TVQPVTEPSV SDIVDGRYSL
301: SSLRRTNTRS SGPIPVPSIY DNVDEDYGTI PVHGTNAQSS GSFPVPSVYD IVDEDYEINP VRRTNTRSTR PDRNANGLPS QGTSSDGSSS HESPQGRGTG
401: RAVLHAHARF GTERARTFRN SRNLSNRIML LRENWPALRA GSAGFATHLH NNSGSSSVKE HQQSVAPPPK ETRHVNKAWK MLEIAKSAGG RKKCDGPSSL
501: DCTPRFSMGN RSTSFSPIDT ILGQKKQRLS PTVTQRDTMN FERGAKNDNI LPRKDVVGHC DLPGNRHVLV RERMGSFQSR MTNQESPNGK VAPSSHSQHV
601: DQRPESSCGG KVASSSHIQH VDQTLESVRG PLGSGKPKTD ALHPSANSLS SGRPTVISPL QIVLSAGSQS GAKVNPEEPS GVRAAASNEI GTVAATVEVR
701: KSSGPDRGES KRKHRSGTRD DQGSKKLRVN PEEPSAVCAT TSNEIGTVAA TVEVRKSSGP DRDGSKRKHR SGTRDDQGSK KPRKSGKLAK SEISCLAMLE
801: LKLLKTDKTY GSDRFKEVAR AATHTVLASY GLEHTPSVAL ALPKPVCKHS CRTGASKPSA IANTCKECLH GFVKQAISSV LASKQMDQTA ASR
101: IVNVAERNQV YHPRGNVSSV VSTDPYVNSG CSVCNCSSDE DLLLLCELCD AASHTYCVGL GTTVPEGDWF CKDCETSKEE HSRCQIEDGG SSDQGEIEIT
201: IEVPTAEAVT EPFASDIVEE GSSLSSVRRT NTRSSGTTIE VPTAEPVTEP SVSDIVDEGY SLSSLRRTNM RSSGTTIEVP TVQPVTEPSV SDIVDGRYSL
301: SSLRRTNTRS SGPIPVPSIY DNVDEDYGTI PVHGTNAQSS GSFPVPSVYD IVDEDYEINP VRRTNTRSTR PDRNANGLPS QGTSSDGSSS HESPQGRGTG
401: RAVLHAHARF GTERARTFRN SRNLSNRIML LRENWPALRA GSAGFATHLH NNSGSSSVKE HQQSVAPPPK ETRHVNKAWK MLEIAKSAGG RKKCDGPSSL
501: DCTPRFSMGN RSTSFSPIDT ILGQKKQRLS PTVTQRDTMN FERGAKNDNI LPRKDVVGHC DLPGNRHVLV RERMGSFQSR MTNQESPNGK VAPSSHSQHV
601: DQRPESSCGG KVASSSHIQH VDQTLESVRG PLGSGKPKTD ALHPSANSLS SGRPTVISPL QIVLSAGSQS GAKVNPEEPS GVRAAASNEI GTVAATVEVR
701: KSSGPDRGES KRKHRSGTRD DQGSKKLRVN PEEPSAVCAT TSNEIGTVAA TVEVRKSSGP DRDGSKRKHR SGTRDDQGSK KPRKSGKLAK SEISCLAMLE
801: LKLLKTDKTY GSDRFKEVAR AATHTVLASY GLEHTPSVAL ALPKPVCKHS CRTGASKPSA IANTCKECLH GFVKQAISSV LASKQMDQTA ASR
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.