Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G214800.1 | Wheat | nucleus | 94.71 | 94.92 |
| TraesCS7B01G119600.1 | Wheat | nucleus | 88.37 | 93.62 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 57.19 | 74.01 |
| Zm00001d045755_P001 | Maize | nucleus | 32.88 | 42.43 |
| EER88243 | Sorghum | nucleus | 33.09 | 40.34 |
| Os06t0283200-01 | Rice | nucleus | 32.45 | 40.24 |
| KRH56752 | Soybean | nucleus | 11.63 | 28.06 |
| Solyc06g069360.2.1 | Tomato | nucleus | 19.24 | 28.0 |
| VIT_17s0000g04770.t01 | Wine grape | nucleus | 18.71 | 27.31 |
| PGSC0003DMT400010393 | Potato | nucleus | 18.71 | 27.23 |
| KRH03187 | Soybean | nucleus | 17.44 | 27.0 |
| GSMUA_Achr3P10630_001 | Banana | nucleus | 18.5 | 25.89 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 9.83 | 10.68 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 13.11 | 10.04 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 12.26 | 8.86 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 |
| PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 |
| SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS7A01G212900 | EnsemblPlants:TraesCS7A01G212900.1 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:176417779..176422724
Molecular Weight (calculated)
101558.0 Da
IEP (calculated)
8.642
GRAVY (calculated)
-0.671
Length
946 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSAGDGLA PPSSASKGKA RMDDDAEAVA AAPEGVPCGI CFTDSRRAIR GELDCCAHHF CFVCIMAWAR VESRCPFCKA RFHTIRRPPV PGRLPSERIV
101: NVAERNQVYH PRGNVSSVVS TDPYVNSRCS VCNCSSDEDL LLLCELCDAA SHTYCVGLGT TVPKGDWFCK DCETSKEEHS RCQIEDGGSS DQGEIEITIE
201: VPTAEPVTEP SASDIVDEGS SLSSVRRTNT RSSGTTIEVP TAEPVTEPSV SDIVDEGYSS SSLRRTNTRS SGTTIEVPTV QPVTEPPVSD IVDGSYSLSS
301: LRRRNTRSSG PIPVPSIYDN VDEDYGTIPV HGTNAQSSGS FPVPSVYDIV DEDYEINPLR RTNTRSTRPD RNANDLPSQG NSSDGSYSHE SPQGRGTGRA
401: LLHAHARFGT ERARTFRNSR NLNNRIMLLR ENWPALRAGS AGFATHLHNN SASSSVKDHQ QSAAPPPKET RYVNKAWKML EMANSAGGRK KCDKPSSLDC
501: TPRFSMGNRS TSFSPIDTIL GQKKQSLSPT VTQRNAMKFD RGAKRDNILP RKDVVGHCDL PGNRHVLVCE GIGSFQSRMT NQESPNGKVA SSSHSQHVDQ
601: TPESSCGGKV ALSSHRQHVD QTLESVHGPL GSGKPKMDAL HPSANSLSSG RPTAISPLQI VSSAGSQSGA KVNPQEPSAA RAATSYEIGT VAATIEVRKS
701: SGPDRGESKR KHRSGMRDDQ GSKKPRVNPE EPSAVRATTS NEIGTVAATV EVRKSSGPDR GESNRKLRSG TRDDQGSKKP RVNPEEPSAV CATTSNEIGT
801: VAATVEVRKS SGPDRDGSKR KHRSGTHDDQ GSKKPRKSGK LAKSEISCLA MLELKLLKID KTYGSDRFKE VARAATHTVL ASYGLEHTPS VALALPKPVC
901: KHSCRTGSSK PSAIANTCKE CLRGFVKQAI SSVLASKQMD QTAASC
101: NVAERNQVYH PRGNVSSVVS TDPYVNSRCS VCNCSSDEDL LLLCELCDAA SHTYCVGLGT TVPKGDWFCK DCETSKEEHS RCQIEDGGSS DQGEIEITIE
201: VPTAEPVTEP SASDIVDEGS SLSSVRRTNT RSSGTTIEVP TAEPVTEPSV SDIVDEGYSS SSLRRTNTRS SGTTIEVPTV QPVTEPPVSD IVDGSYSLSS
301: LRRRNTRSSG PIPVPSIYDN VDEDYGTIPV HGTNAQSSGS FPVPSVYDIV DEDYEINPLR RTNTRSTRPD RNANDLPSQG NSSDGSYSHE SPQGRGTGRA
401: LLHAHARFGT ERARTFRNSR NLNNRIMLLR ENWPALRAGS AGFATHLHNN SASSSVKDHQ QSAAPPPKET RYVNKAWKML EMANSAGGRK KCDKPSSLDC
501: TPRFSMGNRS TSFSPIDTIL GQKKQSLSPT VTQRNAMKFD RGAKRDNILP RKDVVGHCDL PGNRHVLVCE GIGSFQSRMT NQESPNGKVA SSSHSQHVDQ
601: TPESSCGGKV ALSSHRQHVD QTLESVHGPL GSGKPKMDAL HPSANSLSSG RPTAISPLQI VSSAGSQSGA KVNPQEPSAA RAATSYEIGT VAATIEVRKS
701: SGPDRGESKR KHRSGMRDDQ GSKKPRVNPE EPSAVRATTS NEIGTVAATV EVRKSSGPDR GESNRKLRSG TRDDQGSKKP RVNPEEPSAV CATTSNEIGT
801: VAATVEVRKS SGPDRDGSKR KHRSGTHDDQ GSKKPRKSGK LAKSEISCLA MLELKLLKID KTYGSDRFKE VARAATHTVL ASYGLEHTPS VALALPKPVC
901: KHSCRTGSSK PSAIANTCKE CLRGFVKQAI SSVLASKQMD QTAASC
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.