Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G186500.1 | Wheat | nucleus | 90.13 | 90.44 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 89.21 | 88.8 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 82.09 | 76.96 |
| Os03t0302200-01 | Rice | nucleus | 39.27 | 42.8 |
| OQU92733 | Sorghum | nucleus | 34.67 | 37.42 |
| Zm00001d047676_P002 | Maize | nucleus | 35.82 | 29.97 |
| GSMUA_Achr11P... | Banana | nucleus | 25.14 | 28.15 |
| GSMUA_Achr10P... | Banana | nucleus | 18.14 | 27.87 |
| Bra001159.1-P | Field mustard | nucleus | 14.58 | 26.57 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 21.35 | 25.38 |
| CDY14653 | Canola | nucleus | 18.6 | 24.55 |
| KRH33855 | Soybean | nucleus | 22.16 | 24.43 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 32.15 | 22.67 |
| KRG92939 | Soybean | nucleus | 22.04 | 22.38 |
| AT3G05670.2 | Thale cress | nucleus | 22.27 | 21.97 |
| CDX74135 | Canola | nucleus | 21.35 | 21.63 |
| CDY05191 | Canola | nucleus | 20.09 | 21.53 |
| Solyc01g100130.2.1 | Tomato | nucleus | 21.24 | 20.0 |
| PGSC0003DMT400063611 | Potato | nucleus | 21.7 | 19.92 |
| CDY27748 | Canola | cytosol | 6.54 | 15.97 |
| Bra039418.1-P | Field mustard | nucleus | 6.31 | 15.45 |
| TraesCS7A01G212900.1 | Wheat | nucleus | 10.68 | 9.83 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 7.69 | 5.12 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 |
| PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF77 |
| SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS4A01G117900 | EnsemblPlants:TraesCS4A01G117900.1 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| TIGR:cd16574 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:144360325..144364789
Molecular Weight (calculated)
98915.2 Da
IEP (calculated)
4.869
GRAVY (calculated)
-1.124
Length
871 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGEGGGRR RRNLDGDDSD EEYVLEEEED EEEVHELEYG HGGRDAASSS AGEEGGGSDA EYEVDDEDEE EETPRPKRPV KRKANPAPAR SRRRRYEDDD
101: DYSEELEEDE EIGEDLDQEE EPRRPNCETK CGGRSQKAKM PPVAQRSNRP RHGEEEDMDF DPDLDEGGGD EDTDFDPDLE GDDDEFEDEE EDEELGVSHT
201: RTIPRLKNTA RRNPASKLRR GKKKNSNSWK LSKRKVRKPA PVRRRRRSSV IEQYEDDDDD FIVVDEQVKV NRNSRKKARF GRHVEADRPG PVAEADIWPA
301: IDSDSSEFEF GTSEDEPEGE PVRAAVRKGR KRRGVLGSSS DSEFHVSDKE LSDVREEEVK SKKRVRVLQS SSDSEFHVSD KELSDVREEE VKTKKRVRVL
401: QSSSDSEFHI SDKELSDVRE EEVKRKKRTC VLQSSSESEF HASDKELGDN RIEEARRKKR LLVSQSSSDS EFHVSDKDVR DLGEAKSLVA QPMLSVSSRR
501: LSFTRNGWDK GKEKKELVDA GKPWCGICLS EDQRTTLQGV LNCCSHYFCF ACIMEWSKVE SRCPLCKRRF TTITKSSKVD LDLELKKSVI KVEERDQVYQ
601: PTEEEIRRWL DPYENLMCIE CNQGGEDSLM LLCDICDSSA HTYCVGLGRE VPEGNWYCGG CRLSGEGSTH PRSLTNSNSA QLGTNAPIST FGRTPSINTW
701: QTFQGFDLNV SPREIPRQNI HADSRASVLG VSTPTGRFAT LSRRRGWMRM LLDRQRHLIS QDTGHDGVQH SGYAPRADPD HRNFCASSES NSLQHNDSLP
801: RIEPNRRNFS SPWEANSSQT LLDDIRDQHG CFSSVQAQRN STPCLFADGN NFQQTESVNS NVKHICSISP H
101: DYSEELEEDE EIGEDLDQEE EPRRPNCETK CGGRSQKAKM PPVAQRSNRP RHGEEEDMDF DPDLDEGGGD EDTDFDPDLE GDDDEFEDEE EDEELGVSHT
201: RTIPRLKNTA RRNPASKLRR GKKKNSNSWK LSKRKVRKPA PVRRRRRSSV IEQYEDDDDD FIVVDEQVKV NRNSRKKARF GRHVEADRPG PVAEADIWPA
301: IDSDSSEFEF GTSEDEPEGE PVRAAVRKGR KRRGVLGSSS DSEFHVSDKE LSDVREEEVK SKKRVRVLQS SSDSEFHVSD KELSDVREEE VKTKKRVRVL
401: QSSSDSEFHI SDKELSDVRE EEVKRKKRTC VLQSSSESEF HASDKELGDN RIEEARRKKR LLVSQSSSDS EFHVSDKDVR DLGEAKSLVA QPMLSVSSRR
501: LSFTRNGWDK GKEKKELVDA GKPWCGICLS EDQRTTLQGV LNCCSHYFCF ACIMEWSKVE SRCPLCKRRF TTITKSSKVD LDLELKKSVI KVEERDQVYQ
601: PTEEEIRRWL DPYENLMCIE CNQGGEDSLM LLCDICDSSA HTYCVGLGRE VPEGNWYCGG CRLSGEGSTH PRSLTNSNSA QLGTNAPIST FGRTPSINTW
701: QTFQGFDLNV SPREIPRQNI HADSRASVLG VSTPTGRFAT LSRRRGWMRM LLDRQRHLIS QDTGHDGVQH SGYAPRADPD HRNFCASSES NSLQHNDSLP
801: RIEPNRRNFS SPWEANSSQT LLDDIRDQHG CFSSVQAQRN STPCLFADGN NFQQTESVNS NVKHICSISP H
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.