Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27748 | Canola | cytosol | 36.29 | 82.63 |
| CDY14653 | Canola | nucleus | 58.55 | 72.12 |
| CDX74135 | Canola | nucleus | 65.68 | 62.09 |
| AT3G05670.2 | Thale cress | nucleus | 58.79 | 54.13 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 33.21 | 36.83 |
| KRG92939 | Soybean | nucleus | 38.38 | 36.36 |
| KRH33855 | Soybean | nucleus | 31.37 | 32.28 |
| GSMUA_Achr11P... | Banana | nucleus | 26.45 | 27.64 |
| GSMUA_Achr10P... | Banana | nucleus | 18.94 | 27.16 |
| Solyc01g100130.2.1 | Tomato | nucleus | 28.66 | 25.19 |
| PGSC0003DMT400063611 | Potato | nucleus | 28.54 | 24.45 |
| Os03t0302200-01 | Rice | nucleus | 23.37 | 23.78 |
| OQU92733 | Sorghum | nucleus | 22.63 | 22.8 |
| Os07t0690300-01 | Rice | nucleus | 14.39 | 22.29 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 22.76 | 21.34 |
| HORVU2Hr1G015670.1 | Barley | cytosol | 17.34 | 21.17 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 21.89 | 20.51 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 21.53 | 20.09 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 21.53 | 20.0 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 22.39 | 19.59 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 26.2 | 17.21 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 25.58 | 16.84 |
| Zm00001d047676_P002 | Maize | nucleus | 21.28 | 16.62 |
| CDX90783 | Canola | nucleus | 9.1 | 6.45 |
| CDY05126 | Canola | nucleus | 8.86 | 6.32 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078EVB5 | EnsemblPlants:CDY05191 | ProteinID:CDY05191 | ProteinID:CDY05191.1 |
| EnsemblPlantsGene:GSBRNA2T00119997001 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | PFAM:PF00628 | PFAM:PF13639 |
| ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR10615 | PANTHER:PTHR10615:SF132 | SMART:SM00184 |
| SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI0004EF0137 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
BnaC05g46120D
Coordinates
chrLK031960:+:257314..260093
Molecular Weight (calculated)
91508.9 Da
IEP (calculated)
4.721
GRAVY (calculated)
-0.874
Length
813 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRNNLKRS VRSKDKGSDE SDEDYVISDE DESEGDDLNE YAYGEDSFDG YAVEEDEVEV EEEVVLRCVE WPKVKTGPRG NRKITGCRSR KVEQVFVVSD
101: KEEDEDLDDA EEEDERKSVK EIGLGKRRRV FYEVEDEDGD YPEEEDVSCG KEEMALEEQE NASEKEDDGD YDEDEDGDEE FTADEEDVSL DEEEEEEALK
201: VCKRNKRKQR SRGGRKRRNV ASGRKRRGKN TEEGVDEEDD DDDDGDFVDD CLPARKRARS LRPRRRCTLQ SDSDIASSGE SDYEYTISEE EREQVREASS
301: LLRTRVKHVS STRKATVHKD LPQPRKSPVK KSEKKVEIVM KNVCGICLSE EDMRRLKGTL DCCSHYFCFT CIMEWSKVES RCPLCKQRFR TISKPARSTH
401: GVDLREVVIR VPERDQVYQP TEEELRSYLD PYENIICLEC HQGEDDGLML LCDLCDSSAH TYCVGLGMEV PEGNWYCDAC RPVALGTAIS QAHATSEPQR
501: VTGFYSRPSP LVVSGQYQDP SSLVSPRTPF SSGDYLFSSR NGDVQGSSPS GLGGATTLSR RRTLHRHIQN IINGDRLVNM GSRSGGTSMI ANSSDGFLAT
601: QIGHGREREP PQPTGMSLYT ISEERLHSNN PLISTHGPEL LSPKLDHFGS EEGVRHFSSN TFRGDAPIDL GLRHGLAQGD PLFGNQQHLR SYMPNTMFLT
701: GGERLQQRVK AHLQNLSRQI NLGQATFEEI STCSIHTILA ACGLEHKSSE VHFVPPSVTC PHGDMRPGSS SGNNNSSSLM KGCCSSCFDS FVEDVVKMIL
801: DTRQPHWLRL GLH
101: KEEDEDLDDA EEEDERKSVK EIGLGKRRRV FYEVEDEDGD YPEEEDVSCG KEEMALEEQE NASEKEDDGD YDEDEDGDEE FTADEEDVSL DEEEEEEALK
201: VCKRNKRKQR SRGGRKRRNV ASGRKRRGKN TEEGVDEEDD DDDDGDFVDD CLPARKRARS LRPRRRCTLQ SDSDIASSGE SDYEYTISEE EREQVREASS
301: LLRTRVKHVS STRKATVHKD LPQPRKSPVK KSEKKVEIVM KNVCGICLSE EDMRRLKGTL DCCSHYFCFT CIMEWSKVES RCPLCKQRFR TISKPARSTH
401: GVDLREVVIR VPERDQVYQP TEEELRSYLD PYENIICLEC HQGEDDGLML LCDLCDSSAH TYCVGLGMEV PEGNWYCDAC RPVALGTAIS QAHATSEPQR
501: VTGFYSRPSP LVVSGQYQDP SSLVSPRTPF SSGDYLFSSR NGDVQGSSPS GLGGATTLSR RRTLHRHIQN IINGDRLVNM GSRSGGTSMI ANSSDGFLAT
601: QIGHGREREP PQPTGMSLYT ISEERLHSNN PLISTHGPEL LSPKLDHFGS EEGVRHFSSN TFRGDAPIDL GLRHGLAQGD PLFGNQQHLR SYMPNTMFLT
701: GGERLQQRVK AHLQNLSRQI NLGQATFEEI STCSIHTILA ACGLEHKSSE VHFVPPSVTC PHGDMRPGSS SGNNNSSSLM KGCCSSCFDS FVEDVVKMIL
801: DTRQPHWLRL GLH
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.