Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G117900.1 | Wheat | nucleus | 42.8 | 39.27 |
| OQU92733 | Sorghum | nucleus | 39.42 | 39.03 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 42.18 | 38.82 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 42.3 | 38.63 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 41.55 | 35.74 |
| Os07t0690300-01 | Rice | nucleus | 22.65 | 34.48 |
| Zm00001d047676_P002 | Maize | nucleus | 41.05 | 31.51 |
| GSMUA_Achr11P... | Banana | nucleus | 28.41 | 29.18 |
| Bra001159.1-P | Field mustard | nucleus | 16.65 | 27.82 |
| GSMUA_Achr10P... | Banana | nucleus | 19.52 | 27.51 |
| KRH33855 | Soybean | nucleus | 26.16 | 26.46 |
| CDY14653 | Canola | nucleus | 21.15 | 25.61 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 22.4 | 24.42 |
| KRG92939 | Soybean | nucleus | 26.03 | 24.24 |
| CDY05191 | Canola | nucleus | 23.78 | 23.37 |
| CDX74135 | Canola | nucleus | 24.03 | 22.33 |
| AT3G05670.2 | Thale cress | nucleus | 24.28 | 21.97 |
| Solyc01g100130.2.1 | Tomato | nucleus | 24.28 | 20.97 |
| PGSC0003DMT400063611 | Potato | nucleus | 24.66 | 20.76 |
| CDY27748 | Canola | cytosol | 7.38 | 16.53 |
| Bra039418.1-P | Field mustard | nucleus | 7.01 | 15.73 |
| Os06t0283200-01 | Rice | nucleus | 12.89 | 13.5 |
| Os06t0283300-01 | Rice | plasma membrane | 3.5 | 6.45 |
| Os12t0209700-01 | Rice | nucleus | 2.63 | 3.74 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:4332581 | ProteinID:ABF95494.1 | ProteinID:ABF95495.1 | ProteinID:ABF95496.1 |
| ProteinID:BAF11783.1 | ProteinID:BAS83780.1 | ncoils:Coil | ProteinID:EAZ26628.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | EnsemblPlantsGene:Os03g0302200 | EnsemblPlants:Os03t0302200-01 |
| PFAM:PF00628 | PFAM:PF13639 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF77 | UniProt:Q10MN1 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 |
| UniParc:UPI0000DB41E2 | RefSeq:XP_015630853.1 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
RING finger proteinZinc finger, RING/FYVE/PHD-type domain containing protein. (Os03t0302200-01)
Coordinates
chr3:+:10651199..10655589
Molecular Weight (calculated)
90374.2 Da
IEP (calculated)
4.446
GRAVY (calculated)
-1.101
Length
799 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKGGEGAVP VGESGGRRRR RPGEDGGDDD DEEYVVEEDE EEECDEDLSA SSAGEGGEGT DEEYEEGDED EEEDETPRPR QPVKSRENGR KGKADPPVAR
101: SRRRKYEDDD DYSEEEDDRV DEYGEDLEEE EEDLEEEEEE DDEAPRSKRM KKRGGRNVEG KLPLERSNRR RYEEDMDFDP DMDEEEEEED VDFDPEVEDE
201: EEEDFEDEED DELEATKVRV KNMGRRKSTL NQRRGKMKSS SKVASRKVGS VKARNAASIR RRQKKRSMLD RYEDDDFIVE DEVMADWQPR KKARIRKQME
301: VDPPTPVFEA EIWPTIDSDT TDFEFVTSDE EAAIAEPTRV IKKGRKKRVF VSDSSSDSEF VVSDKELGNL KESEPPESLK VLPSSPRKIS VTGNGEHKGK
401: EKKEPQEAGR ATCGICLSEE QRVTVQGVLD CCSHYFCFAC IMQWSKVESR CPLCKRRFTT ITKSSKEDTG LELTNSVIRV EERDQVYQPT EEEIRRWLDP
501: YENVVCIECN QGGDDSLMLL CDICDSSAHT YCVGLGREVP EGNWYCGGCR LDGEAHSYHN HVNGNSGMFG AISPIGTFER QGIDLNVSPR EIPRGNHSVE
601: SQASTAGAST PSGRQTNATN FRRRQMHDWI RSLLSRPRTT LGPVMHHNGV HQSGFVPSTE PDHMNFCAPL ESDTLHNTGS VPQSEPSQNF HVMSEANTSE
701: TSFGRHAALS ERRQIYERFF MLLSRPSPTI RPDLCHNASE HGSSVPRVEP NHMNFHAPPV ANSPQTLLDG IPNRSNGFSF TQAHSNFVDG NNFQGTEGV
101: SRRRKYEDDD DYSEEEDDRV DEYGEDLEEE EEDLEEEEEE DDEAPRSKRM KKRGGRNVEG KLPLERSNRR RYEEDMDFDP DMDEEEEEED VDFDPEVEDE
201: EEEDFEDEED DELEATKVRV KNMGRRKSTL NQRRGKMKSS SKVASRKVGS VKARNAASIR RRQKKRSMLD RYEDDDFIVE DEVMADWQPR KKARIRKQME
301: VDPPTPVFEA EIWPTIDSDT TDFEFVTSDE EAAIAEPTRV IKKGRKKRVF VSDSSSDSEF VVSDKELGNL KESEPPESLK VLPSSPRKIS VTGNGEHKGK
401: EKKEPQEAGR ATCGICLSEE QRVTVQGVLD CCSHYFCFAC IMQWSKVESR CPLCKRRFTT ITKSSKEDTG LELTNSVIRV EERDQVYQPT EEEIRRWLDP
501: YENVVCIECN QGGDDSLMLL CDICDSSAHT YCVGLGREVP EGNWYCGGCR LDGEAHSYHN HVNGNSGMFG AISPIGTFER QGIDLNVSPR EIPRGNHSVE
601: SQASTAGAST PSGRQTNATN FRRRQMHDWI RSLLSRPRTT LGPVMHHNGV HQSGFVPSTE PDHMNFCAPL ESDTLHNTGS VPQSEPSQNF HVMSEANTSE
701: TSFGRHAALS ERRQIYERFF MLLSRPSPTI RPDLCHNASE HGSSVPRVEP NHMNFHAPPV ANSPQTLLDG IPNRSNGFSF TQAHSNFVDG NNFQGTEGV
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.