Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400063611 | Potato | nucleus | 68.54 | 66.81 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 26.7 | 33.7 |
| KRH33855 | Soybean | nucleus | 28.76 | 33.67 |
| Bra001159.1-P | Field mustard | nucleus | 17.19 | 33.26 |
| CDY14653 | Canola | nucleus | 23.24 | 32.58 |
| KRG92939 | Soybean | nucleus | 28.11 | 30.3 |
| GSMUA_Achr10P... | Banana | nucleus | 17.95 | 29.28 |
| CDY05191 | Canola | nucleus | 25.19 | 28.66 |
| CDX74135 | Canola | nucleus | 26.05 | 28.02 |
| AT3G05670.2 | Thale cress | nucleus | 25.62 | 26.84 |
| Os07t0690300-01 | Rice | nucleus | 14.05 | 24.76 |
| Os03t0302200-01 | Rice | nucleus | 20.97 | 24.28 |
| GSMUA_Achr11P... | Banana | nucleus | 20.32 | 24.16 |
| OQU92733 | Sorghum | nucleus | 20.86 | 23.92 |
| TraesCS4B01G186500.1 | Wheat | nucleus | 20.0 | 21.31 |
| TraesCS4A01G117900.1 | Wheat | nucleus | 20.0 | 21.24 |
| Bra039418.1-P | Field mustard | nucleus | 8.11 | 21.07 |
| TraesCS4D01G187800.1 | Wheat | nucleus | 19.78 | 20.91 |
| CDY27748 | Canola | cytosol | 8.0 | 20.73 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 20.32 | 20.24 |
| TraesCS2D01G092600.1 | Wheat | nucleus | 18.59 | 19.84 |
| Zm00001d047676_P002 | Maize | nucleus | 21.19 | 18.83 |
| HORVU2Hr1G015670.1 | Barley | cytosol | 13.3 | 18.47 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 22.81 | 17.09 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 22.81 | 17.04 |
| Solyc06g069360.2.1 | Tomato | nucleus | 11.24 | 16.0 |
| Solyc12g055910.1.1 | Tomato | nucleus | 7.35 | 5.56 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 | UniProt:K4B147 | PFAM:PF00628 | PFAM:PF13639 |
| ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF77 | SMART:SM00184 |
| SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc01g100130.2 | EnsemblPlants:Solyc01g100130.2.1 | UniParc:UPI0002769143 |
| InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:90225349..90229212
Molecular Weight (calculated)
104939.0 Da
IEP (calculated)
4.578
GRAVY (calculated)
-1.161
Length
925 amino acids
Sequence
(BLAST)
(BLAST)
001: MARGGNGGRK TSDRRKAGST YRASDQSDED YTVDDDEEFD ESEDGYSSFV GDDSEESLGE YEEEEEELKR RKVKRVARSK APSRKEKGTV NSRKRKRVSY
101: REDDNEDDEV DEDDEEFTPD CLDEEKEFPV TKGTNNSSKR RLRKGTVKDE DDEEFTPDCL DDEEEFPVMK GTNNSSKRRL CKGTVKDEDD EEFIPDCLDV
201: EEEESPVTEG TDNSSKRQLC KATFKDEDED FTPDCLDNED DEEEESPVME GTDNSSKRRL RRGTVKDEED EELNSDGWHE EEDFPVMKGM KNSSRLQRLK
301: ATAKDDYEDD DEEDKDDEEF TPVSLDEEED IPITKGMKNS SKPRLCKGST KDDDEDDDDD EEFTPDGLDE EEEEEFPEME GIKYSAKPRS RKGTARVQNR
401: NRNHKKLKKI TRKKPLKRRQ LRRKARSEND EEFIDVDPTM KEKNKKNAGQ RRKRKRLTVD SDSDFVASSG SSEREFTISE EEREQVREAN NFCRSLVTTW
501: RGSASLKKSP IEEAPRLQRK HPARKAKEKM EELKIEAGKQ ICGICLSEEG KRTVRGTLNC CSHYFCFACI MEWSKVESRC PLCKQRFVTI SKPARSDTGF
601: DLRTVAIQVP ERDQVYQPSE EELRGYLDPY ENVLCTECQQ GGDDALMLLC DLCDSPAHTY CVGLGHEVPE GNWYCESCRP TALASLNPQN LNPMPDNRTS
701: GSFSVGSPPV ANVRETFDLN EMYVPDTPLT EESGDFHSPR DGQVSSLASG IGAFTVSDRR RIQRQIHQLL NNRRRQLGNI AGTSGAVSGN SLFGSQIARS
801: RGLANQPAIA PRAVPHNSFF RGRQLESDAH LSQNPNLVPE RASHLSGQLN LNGASTSSQS FFGEFLESEL QGTDASFNFN LVHQQLHPCS SSRSNVGPDS
901: STSPCQFREP AVPSRTLPST LRRQF
101: REDDNEDDEV DEDDEEFTPD CLDEEKEFPV TKGTNNSSKR RLRKGTVKDE DDEEFTPDCL DDEEEFPVMK GTNNSSKRRL CKGTVKDEDD EEFIPDCLDV
201: EEEESPVTEG TDNSSKRQLC KATFKDEDED FTPDCLDNED DEEEESPVME GTDNSSKRRL RRGTVKDEED EELNSDGWHE EEDFPVMKGM KNSSRLQRLK
301: ATAKDDYEDD DEEDKDDEEF TPVSLDEEED IPITKGMKNS SKPRLCKGST KDDDEDDDDD EEFTPDGLDE EEEEEFPEME GIKYSAKPRS RKGTARVQNR
401: NRNHKKLKKI TRKKPLKRRQ LRRKARSEND EEFIDVDPTM KEKNKKNAGQ RRKRKRLTVD SDSDFVASSG SSEREFTISE EEREQVREAN NFCRSLVTTW
501: RGSASLKKSP IEEAPRLQRK HPARKAKEKM EELKIEAGKQ ICGICLSEEG KRTVRGTLNC CSHYFCFACI MEWSKVESRC PLCKQRFVTI SKPARSDTGF
601: DLRTVAIQVP ERDQVYQPSE EELRGYLDPY ENVLCTECQQ GGDDALMLLC DLCDSPAHTY CVGLGHEVPE GNWYCESCRP TALASLNPQN LNPMPDNRTS
701: GSFSVGSPPV ANVRETFDLN EMYVPDTPLT EESGDFHSPR DGQVSSLASG IGAFTVSDRR RIQRQIHQLL NNRRRQLGNI AGTSGAVSGN SLFGSQIARS
801: RGLANQPAIA PRAVPHNSFF RGRQLESDAH LSQNPNLVPE RASHLSGQLN LNGASTSSQS FFGEFLESEL QGTDASFNFN LVHQQLHPCS SSRSNVGPDS
901: STSPCQFREP AVPSRTLPST LRRQF
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.