Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G092600.1 | Wheat | nucleus | 59.76 | 45.91 |
| TraesCS2A01G094000.1 | Wheat | nucleus | 59.91 | 32.31 |
| TraesCS2B01G108800.1 | Wheat | nucleus | 59.76 | 32.15 |
| Bra001159.1-P | Field mustard | nucleus | 21.77 | 30.33 |
| GSMUA_Achr11P... | Banana | nucleus | 28.38 | 24.29 |
| CDY14653 | Canola | nucleus | 21.62 | 21.82 |
| CDY27748 | Canola | cytosol | 11.26 | 21.01 |
| GSMUA_Achr10P... | Banana | nucleus | 17.87 | 20.99 |
| VIT_14s0060g01560.t01 | Wine grape | nucleus | 22.97 | 20.87 |
| Bra039418.1-P | Field mustard | nucleus | 11.11 | 20.79 |
| HORVU4Hr1G054580.2 | Barley | nucleus, plastid | 24.77 | 17.76 |
| CDY05191 | Canola | nucleus | 21.17 | 17.34 |
| KRG92939 | Soybean | nucleus | 21.92 | 17.02 |
| CDX74135 | Canola | nucleus | 21.62 | 16.74 |
| AT3G05670.2 | Thale cress | nucleus | 21.32 | 16.08 |
| KRH33855 | Soybean | nucleus | 17.87 | 15.06 |
| Os07t0690300-01 | Rice | nucleus | 11.11 | 14.1 |
| Solyc01g100130.2.1 | Tomato | nucleus | 18.47 | 13.3 |
| PGSC0003DMT400063611 | Potato | nucleus | 17.87 | 12.54 |
| HORVU7Hr1G043160.1 | Barley | nucleus | 7.96 | 7.25 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | UniProt:A0A287H5V4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G015670 | EnsemblPlants:HORVU2Hr1G015670.1 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| PFAM:PF00628 | ScanProsite:PS00518 | PFscan:PS50016 | PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF77 |
| SMART:SM00249 | SUPFAM:SSF57850 | SUPFAM:SSF57903 | UniParc:UPI000B46FE14 | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD |
| InterPro:Znf_PHD-finger | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : |
Description
No Description!
Coordinates
chrchr2H:+:34862018..34865210
Molecular Weight (calculated)
46125.1 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.310
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SEEQRATIQG VLNCCSHYFC FACILEWSKV ESRCPLCKRR FNTITKSSVA
301: DLGLGLRNAP VRVEKRDQVY QPTEDEMRRW LDPYENVVCI ECNQGGDDNL MLLCDICDSS AHTFCVGLGR EVPEGNWYCG GCRSSVEGPS HAQTQERVLP
401: RGESNMNTAD SSSSSFGRSI SNGVFQRPPP INVQPSLQGF DLNLSPIETP EEDKRAESHI SAEPVSTPTG RHATLDRRRA LNRRIRILLF RPRTATNPWQ
501: NSIQHDRSTP GAEQNQRNAC TSTDVSPSCS RADFMQSQQS SSQFVQSASN LNQCTDEGGS NFREVANAKD QLIPIVKKSI KHICARSPLD QSSFTNVARR
601: ATHTILALSG IAHNKDRVVA TPFPFPSHCC HACDGREPAF LMRTICSSCF NSFVGDVVSH IASMFS
101: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
201: XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX SEEQRATIQG VLNCCSHYFC FACILEWSKV ESRCPLCKRR FNTITKSSVA
301: DLGLGLRNAP VRVEKRDQVY QPTEDEMRRW LDPYENVVCI ECNQGGDDNL MLLCDICDSS AHTFCVGLGR EVPEGNWYCG GCRSSVEGPS HAQTQERVLP
401: RGESNMNTAD SSSSSFGRSI SNGVFQRPPP INVQPSLQGF DLNLSPIETP EEDKRAESHI SAEPVSTPTG RHATLDRRRA LNRRIRILLF RPRTATNPWQ
501: NSIQHDRSTP GAEQNQRNAC TSTDVSPSCS RADFMQSQQS SSQFVQSASN LNQCTDEGGS NFREVANAKD QLIPIVKKSI KHICARSPLD QSSFTNVARR
601: ATHTILALSG IAHNKDRVVA TPFPFPSHCC HACDGREPAF LMRTICSSCF NSFVGDVVSH IASMFS
001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH
Arabidopsis Description
F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.