CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33855	Soybean	nucleus	71.21	77.34
Bra001159.1-P	Field mustard	nucleus	26.81	48.12
VIT_14s0060g01560.t01	Wine grape	nucleus	36.25	42.43
CDY14653	Canola	nucleus	32.4	42.12
CDY27748	Canola	cytosol	16.55	39.78
Bra039418.1-P	Field mustard	nucleus	16.32	39.33
CDY05191	Canola	nucleus	36.36	38.38
CDX74135	Canola	nucleus	36.95	36.86
AT3G05670.2	Thale cress	nucleus	36.36	35.33
GSMUA_Achr11P...	Banana	nucleus	27.97	30.85
GSMUA_Achr10P...	Banana	nucleus	19.46	29.45
Solyc01g100130.2.1	Tomato	nucleus	30.3	28.11
PGSC0003DMT400063611	Potato	nucleus	29.6	26.77
Os03t0302200-01	Rice	nucleus	24.24	26.03
OQU92733	Sorghum	nucleus	22.49	23.92
Os07t0690300-01	Rice	nucleus	14.57	23.81
KRH38611	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	3.38	23.77
TraesCS2D01G092600.1	Wheat	nucleus	23.89	23.64
TraesCS4B01G186500.1	Wheat	nucleus	22.73	22.47
TraesCS4D01G187800.1	Wheat	nucleus	22.84	22.4
TraesCS4A01G117900.1	Wheat	nucleus	22.38	22.04
HORVU2Hr1G015670.1	Barley	cytosol	17.02	21.92
HORVU4Hr1G054580.2	Barley	nucleus, plastid	22.61	20.88
KRH56752	Soybean	nucleus	9.21	20.15
Zm00001d047676_P002	Maize	nucleus	23.19	19.12
KRH03187	Soybean	nucleus	13.29	18.66
TraesCS2A01G094000.1	Wheat	nucleus	26.11	18.14
TraesCS2B01G108800.1	Wheat	nucleus	25.87	17.93
KRH38612	Soybean	cytosol, nucleus, plastid	4.31	14.68
KRG98787	Soybean	cytosol	4.08	10.06
KRH60053	Soybean	nucleus	8.97	5.89
KRH41328	Soybean	nucleus	8.74	5.8

Protein Annotations

EntrezGene:100797448	Gene3D:3.30.40.10	MapMan:35.2	EMBL:ACUP02012773	ncoils:Coil	EnsemblPlantsGene:GLYMA_20G238800
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	InterPro:IPR019787
UniProt:K7N5B7	EnsemblPlants:KRG92939	ProteinID:KRG92939	ProteinID:KRG92939.1	ProteinID:KRG92940.1	PFAM:PF00628
PFAM:PF13639	ScanProsite:PS00518	PFscan:PS50016	PFscan:PS50089	PANTHER:PTHR10615	PANTHER:PTHR10615:SF132
SMART:SM00184	SMART:SM00249	SUPFAM:SSF57850	SUPFAM:SSF57903	UniParc:UPI00023DCABE	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:47045092..47049130

Molecular Weight (calculated)

97170.1 Da

IEP (calculated)

5.529

GRAVY (calculated)

-0.949

Length

858 amino acids

Sequence
(BLAST)

001: MVRGGRFSGK RNFRKRVRSK EGVSDDSDED YVVSDEGREA SDYYCSSLDG CASEEGFDSL MEEEEEEFRR VRSLNRSKSE KGIAGRWKNG IKNSYKRGRI
101: TYEEEEEEEE VEEEFEEEEE EEIQEVRNFN RSKAKNGVCS KKKRAGKISP KRGRKIRAEH LEEEEEEEEE KQVVEDEEEE KVERSGDEEE EPEGDRDGED
201: EDFEYDDEDD EFLPEEEDYS DEEEEMGGRK KKNDGVKMEK EVLQKKRASV VSTRGRKRRS SIASKKPLRN KRRKNGRLRK KEKCEDDFID NGTTIGTTTR
301: RKQGQKRRRV LLSDSDYASS GSSDFEFTIS EEEREQVREA KRLCGNLRNN LRSSSHLINN EEVGVHEYQH PQRKPPARKG KEKIEEPLGR KGKEKVEDLK
401: SKGKQTCGIC LSEEDKRRVR GVLNCCTHFF CFACIMEWAK VESRCPLCKQ RFKAISKPAR STTGIDLREV VIQVPERDQV YQPSEEELRS YIDPYEYVIC
501: SECHQGGDDG LMLLCDICDS PAHTYCVGLG REVPEGNWYC DGCRPVALGS SSSQVQEGVA DPRVSVQSHP VRPPPVLHVR ESIDLNLISS PRAAFNQGFG
601: HLPSSRFSGR SAEGASPVSG GAPTLSERRW IHRQIQQLLS IDRMASTPGR TNGISATSST SNLYSSHFDQ SRGTTTLHAR TQDVGTSYHT FFDERLCNNS
701: SPLMQNGALW SGLMGTPPVP DCEQVHQFSR SNIVPDGGLS PAVREESNFH FAKEQLQSMV KSHLKSLSQN IDLGHNTIKD IARSSMHTIL AACDLEHMKS
801: EVCTVPPPSA CSHMELMAGG QTSLIKGCCS SCFDSFVGDV VKRILDTRIS SQWLRLGL

Best Arabidopsis Sequence Match ( AT3G05670.3 )
(BLAST)

001: MGKRNTSWAR NSNRKVRSKD KGSDESDEDY VISDEDEEES EADLKEEYAS SVDGEPSFDG FNGSDAVEDE ELDEVEEEDV MLRNVEWPKV KTGPRGNRKI
101: TGCKSRKTNQ VVVSDNEDVD LDDADDEDDE IRNSRNAVGK SGSLDGEKHQ RIGLGKRRRV FYEIEDEDGD YPEEDGDEEE ERDVENVDSN SLHDGEDGKM
201: ALEEQDNVSH ETEKEDDGDY EDEDEDDDGD EDFTADEDVS LDEEEEEEII ACNKNALKVC KGNKRKRRSG EGRKRRKKCS VAKTRLTRGR KRRVRNTKKG
301: VDEDDDDFVD DCLPARKKAK TKSSRPRPRR RCTVPSDSDV ASSGESDYEY TISEEEREQI REAGSLLKSS VNHASSIRQT TVNKDLPQLR KSPVKKGEKK
401: VELVKRDVIK NVCGICLSEE DMRRLKGTLD CCSHYFCFTC IMEWSKVESR CPLCKQRFRT ISKPARSTPG VDLREVVIPV PERDQVYQPT EEELRSYLDP
501: YENIICTECH QGDDDGLMLL CDLCDSSAHT YCVGLGREVP EGNWYCEGCR PVALGSASSQ THIISEQQRG SGFYSRPSPL VVSGQYQDVS LIVSPRTPFF
601: NGENLFSPRI PNGDAQGSSP SGLGATTLSR RRTLHRHIQN IINGDRLINM GARTGGTSSD GFVTTQIGHG RTIDPSQPVA SQETGISLYA ISEERLPNNN
701: SLISAHDPEL LSPKLDEFGS EEAFRRLSNN TFLGERPIDL GFHHGLAQGD PLVSNQQRLH SHMPNTMSSM AGERLQERVK AHLKNLSSQN DLGQTTFDEI
801: STCSIHTILA ACGLEHESSE VHLVPPPVTC THHHMTPGSS SSSSSGSSLM KGCCYSCFDS FVEDVVKMIL DTRQPHWLSL GLH

Arabidopsis Description

F18C1.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9M9X2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.