Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra003735.1-P | |
| Bra008231.1-P | |
| Bra015801.1-P | |
| Bra021379.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10930.1 | Bra003735.1-P | AT1G75950.1 | 12795696 |
| AT4G10930.1 | Bra008231.1-P | AT1G75950.1 | 12795696 |
| AT4G10930.1 | Bra015801.1-P | AT1G75950.1 | 12795696 |
| AT4G10930.1 | Bra021379.1-P | AT3G03000.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90783 | Canola | nucleus | 92.91 | 95.9 |
| CDY05126 | Canola | nucleus | 87.5 | 90.88 |
| AT4G10930.1 | Thale cress | nucleus | 65.29 | 65.34 |
| KRH38611 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 5.91 | 57.38 |
| Solyc12g055910.1.1 | Tomato | nucleus | 38.18 | 36.93 |
| VIT_02s0025g01650.t01 | Wine grape | nucleus | 39.53 | 36.51 |
| KRH41328 | Soybean | nucleus | 39.44 | 36.09 |
| KRH60053 | Soybean | nucleus | 39.02 | 35.35 |
| Os12t0209700-01 | Rice | nucleus | 14.61 | 30.78 |
| GSMUA_Achr3P31620_001 | Banana | nucleus | 33.53 | 29.8 |
| TraesCS3D01G287700.1 | Wheat | nucleus | 30.49 | 28.18 |
| TraesCS3A01G287900.3 | Wheat | nucleus | 30.74 | 27.81 |
| OQU84317 | Sorghum | nucleus | 29.39 | 27.8 |
| TraesCS3B01G322600.5 | Wheat | mitochondrion | 30.32 | 27.18 |
| Zm00001d053989_P003 | Maize | plastid | 28.8 | 25.99 |
| Bra001159.1-P | Field mustard | nucleus | 6.59 | 16.32 |
| Bra039418.1-P | Field mustard | nucleus | 3.38 | 11.24 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra000729 | EnsemblPlants:Bra000729.1 | EnsemblPlants:Bra000729.1-P | InterPro:EloA-BP1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:IPR019787 |
| UniProt:M4C951 | PFAM:PF00628 | PFAM:PF13923 | PFAM:PF15870 | ScanProsite:PS00518 | PFscan:PS50016 |
| PFscan:PS50089 | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF76 | SMART:SM00184 | SMART:SM00249 | SUPFAM:SSF57850 |
| SUPFAM:SSF57903 | UniParc:UPI000254036B | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | SEG:seg | : | : | : |
Description
AT4G10930 (E=2e-209) | unknown protein
Coordinates
chrA03:-:12695166..12701026
Molecular Weight (calculated)
130088.0 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.600
Length
1184 amino acids
Sequence
(BLAST)
(BLAST)
0001: MELDFDAGNL LEDEAGEVGH NDMAGFEGER CGICMDIIVD RGLLDCCQHW FCFECIDNWS SIMNLCPLCQ REFQLITCVP VNDFGESSKV DEVSLSGYSF
0101: HASLFLAEEL YFPQRSNWDE DWCVEEDTDA LSSPSHYIDE NAVICLDGDL CKIRNTFNYI GGDSNLDTSI ACDSCDTWYH AVCVGFDLEI ASEDTWVCPR
0201: CLSSEKPFES DASPMETTKP PAIPESTNSG CSVEAIYSGN FSVTVADDGE TALVVSTVKG DEWPMKPSDT NASLVQAMVY GDPNNSGRKE NTEQVPGKSE
0301: LMQSLPHQLS SELPLESNQP LFAAQMEIRA DSQYALSLVA SGRDIFAFCA TVDPVIGLEE KECLPVNVEK SLSSTAFSNS DVASVVSLKR KHSDCSGNDD
0401: NSKIKAEIAE RLVKPKLEEM EEKAAIRHES RSPSNNTTVD IFSIVKGFGS KKKPALPNTT DKSSEGENAV GLRVKKIKKT PEDDKESLVL VEKLRKEIRE
0501: AVRNKSMEDI RKDQFDPKLL AAFRAAVAGS KTDEAPRKIP ALALKAKKLM LQKGKVRENL TKKIYADTNG KRKSAWHRDC EVEFWKHRCM KAGKPEKIET
0601: LKSVLSLLKK NPADTEKNVS SEAPQASNPI LSRLYLADTS VFPRNHDIKP LVGSKETGLD KTLPKSSDVK GNNSNAAGSK INSGSKPPIF ENPDELKKDK
0701: RKWALQVLAR KKALAGSNSS EDKEGSPELK GNYPLLAQLP ADMRPNLATS RHNKVPVAVR QAQLYRLTEH LLKKENLLEV RRSAATELAV ADAINIEKVI
0801: ADKSSSKVVY LNLCSQEILH HSESKAMDTN AVEPTTSPPL SNNGTEHVDD KDSDDVAVLQ ALRAAGLVDS PPNSPNRSSE VPPDKEDGAL DKAKEVGPDS
0901: VLDIGSVPDT DIFGDFEYEL DDEDYIGATK ATKAAETQQD EGLTKVKVVL STVQPEKVLN QSEVLGNEET TINQEGTTNG EEDGKSFVPM EPVPEAEAEA
1001: EGEGEGGEIL SLAECEELYG PGTEKLVEKP LTEGSADNGL QAKAPDSECE SNTHREFMAS NFEKTSIQEK KLPTRIPNCN PSEKPSKEEK SKADGFSDSI
1101: IKKVEAYIKE HIRPLCKSGV INVDQYRWAV TKTREKVMKY HSKAKSANFL IKEGDKIKKL AEQYVETAAS SSTGAHHKEK DKCK
0101: HASLFLAEEL YFPQRSNWDE DWCVEEDTDA LSSPSHYIDE NAVICLDGDL CKIRNTFNYI GGDSNLDTSI ACDSCDTWYH AVCVGFDLEI ASEDTWVCPR
0201: CLSSEKPFES DASPMETTKP PAIPESTNSG CSVEAIYSGN FSVTVADDGE TALVVSTVKG DEWPMKPSDT NASLVQAMVY GDPNNSGRKE NTEQVPGKSE
0301: LMQSLPHQLS SELPLESNQP LFAAQMEIRA DSQYALSLVA SGRDIFAFCA TVDPVIGLEE KECLPVNVEK SLSSTAFSNS DVASVVSLKR KHSDCSGNDD
0401: NSKIKAEIAE RLVKPKLEEM EEKAAIRHES RSPSNNTTVD IFSIVKGFGS KKKPALPNTT DKSSEGENAV GLRVKKIKKT PEDDKESLVL VEKLRKEIRE
0501: AVRNKSMEDI RKDQFDPKLL AAFRAAVAGS KTDEAPRKIP ALALKAKKLM LQKGKVRENL TKKIYADTNG KRKSAWHRDC EVEFWKHRCM KAGKPEKIET
0601: LKSVLSLLKK NPADTEKNVS SEAPQASNPI LSRLYLADTS VFPRNHDIKP LVGSKETGLD KTLPKSSDVK GNNSNAAGSK INSGSKPPIF ENPDELKKDK
0701: RKWALQVLAR KKALAGSNSS EDKEGSPELK GNYPLLAQLP ADMRPNLATS RHNKVPVAVR QAQLYRLTEH LLKKENLLEV RRSAATELAV ADAINIEKVI
0801: ADKSSSKVVY LNLCSQEILH HSESKAMDTN AVEPTTSPPL SNNGTEHVDD KDSDDVAVLQ ALRAAGLVDS PPNSPNRSSE VPPDKEDGAL DKAKEVGPDS
0901: VLDIGSVPDT DIFGDFEYEL DDEDYIGATK ATKAAETQQD EGLTKVKVVL STVQPEKVLN QSEVLGNEET TINQEGTTNG EEDGKSFVPM EPVPEAEAEA
1001: EGEGEGGEIL SLAECEELYG PGTEKLVEKP LTEGSADNGL QAKAPDSECE SNTHREFMAS NFEKTSIQEK KLPTRIPNCN PSEKPSKEEK SKADGFSDSI
1101: IKKVEAYIKE HIRPLCKSGV INVDQYRWAV TKTREKVMKY HSKAKSANFL IKEGDKIKKL AEQYVETAAS SSTGAHHKEK DKCK
0001: MELDFDASNL VEDEAVEVEH NGMTEIEGER CGICMDIIID RGVLDCCQHW FCFECIDNWS TIMNLCPLCQ REFQLITCVP VFDSGESSKV DEDLVSGDED
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
0101: CCIEEETDVV SSPSHYIDDT HYIDENAVVC LDGDLCKIRN TFSYIEGDSN LDTSIACDSC DMWYHAICVG FDVENASEDT WVCPRCLSNE KPHEPDTSPM
0201: ETQPDTSLME TRKSLDISEK TNSGCSVEAV YSGNFSVTVA DDGETALVVS IVKGDESHMG PSDTNPLPVQ AKMDGDPDSS HLKILCREEN TEQVAVKSEL
0301: NQSLPHDISS RLSSDSDQPF FAADIENRAD PVVEKDCLSI DDKKNLSTAA ISNSDVASVI SLKRKHSDCS GDDGNSETKP EIYESLNELK LEEEEELTTV
0401: HHESRSPSNN TTVDIFSIVK GTGRRKNLMR SNPTDKSSEA ENAAGLRVKK IKRTPEDEKE SMVLVEKLRK EIREAVRNKS MEDIRENQFD PKLLAAFRAA
0501: VAGPKTGEAP RRSSALAVKA KKLMLQKGKV RENLTKKIYA DLNGKRKSAW HRDCEVEFWK HRCIQGRKPE KIETLKSVLS LLKNKPADTK TNFSSETPQA
0601: SNPILSRLYL ADTSVFPRND NLKPLLAPKE MGNSQNNGKP TEASKTLPKI SAAKGSSVKA AGSKLNSGNK QSDGQPNLTS SNSKEMVENP DDLKKDKRKW
0701: ALQVLARKKA LAGNNSTQDK EGSPELKGNY PLLAQLPADM RPSLATSRHN KVPVAVRQTQ LYRLTEHLLK KENLLTIRRS AATELAVADA INIEKAIADK
0801: SSSKVVYLNL CSQEILHHSE SKTMDNAVEP NSSSPMADSE SERISSKDSD NPAVLEALRA AGLADSPPNS PTRSVEVLPE KGDSSLDKTR ETGPYNVFDM
0901: DSVPDTDIFG DFEYELDEED YFGATMAKKA SVMQPDESLT KVKVVLSTVQ PGKSLNPSEV VEDEETTTEN LNETTNGKED GKSFVPMELV PEAEGEGEGE
1001: GEGEGEGEGG GEILSVAECE ELYGPGTEKL VERPLIEGFA ENGVKAKAPD SECESNTQRE FIASNFEITC IQEKKLPRSI QKCKPSEKPS KEEKGKADGF
1101: GNSITKKVEA YIKEHIRPLC KSGVINVEQY RWAVTKTTEK VMKYHSKAKS ANFLIKEGDK IKKLAEQYVE TASSGAHHKD KCK
Arabidopsis Description
unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plant /.../37; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G10930]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.