Factsheet for Bra021379.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006048.1-P
Bra012351.1-P
Bra012910.1-P
Bra024408.1-P
Bra024548.1-P
Bra029990.1-P
Bra030218.1-P
Bra031849.1-P
Bra036048.1-P
Bra038621.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G03000.1	Bra012351.1-P	AT1G22920.1	21798944
AT3G03000.1	Bra024548.1-P	AT1G22920.1	21798944
AT3G03000.1	Bra030218.1-P	AT2G22680.1	21798944
AT3G03000.1	Bra012910.1-P	AT3G50060.1	21798944
AT3G03000.1	Bra029990.1-P	AT3G50060.1	21798944
AT3G03000.1	Bra036048.1-P	AT3G50060.1	21798944
AT3G03000.1	Bra006048.1-P	AT5G10110.1	21798944
AT3G03000.1	Bra038621.1-P	AT5G63310.1	21798944
AT3G03000.1	Bra024408.1-P	AT5G65683.1	21798944
AT3G03000.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58544	Canola	cytosol	100.0	100.0
AT3G03000.1	Thale cress	cytosol	89.94	92.12
VIT_16s0039g01880.t01	Wine grape	cytosol	76.92	79.75
PGSC0003DMT400038352	Potato	cytosol	75.74	78.53
Solyc03g097100.1.1	Tomato	cytosol	75.15	77.91
KRH25249	Soybean	cytosol	70.41	73.01
KRH30413	Soybean	cytosol	68.64	72.96
Bra040770.1-P	Field mustard	cytosol	63.91	65.06
Bra025896.1-P	Field mustard	cytosol	46.75	50.32
Bra017355.1-P	Field mustard	cytosol	46.15	48.45
Bra025149.1-P	Field mustard	cytosol	46.15	48.15
Bra025438.1-P	Field mustard	cytosol	30.18	45.13
Bra002368.1-P	Field mustard	cytosol	39.65	44.97
Bra020155.1-P	Field mustard	cytosol	39.65	44.97
Bra004166.1-P	Field mustard	cytosol	39.65	44.97
Bra006595.1-P	Field mustard	cytosol	39.65	44.97
Bra034981.1-P	Field mustard	cytosol	38.46	44.83
Bra000214.1-P	Field mustard	cytosol	39.05	44.3
Bra003251.1-P	Field mustard	cytosol	39.05	44.3
Bra019453.1-P	Field mustard	cytosol	39.05	44.3
Bra012037.1-P	Field mustard	cytosol	39.05	44.3
Bra014671.1-P	Field mustard	cytosol	39.05	44.3
Bra007269.1-P	Field mustard	cytosol	38.46	43.62
Bra001892.1-P	Field mustard	cytosol	38.46	42.21
Bra023786.1-P	Field mustard	cytosol	37.87	41.03
Bra033898.1-P	Field mustard	cytosol	37.28	40.65
Bra039723.1-P	Field mustard	cytosol	36.69	40.52
Bra034317.1-P	Field mustard	cytosol	39.65	37.43
Bra026976.1-P	Field mustard	cytosol	28.4	32.43
Bra019756.1-P	Field mustard	cytosol	26.63	30.41

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	EnsemblPlantsGene:Bra021379	EnsemblPlants:Bra021379.1	EnsemblPlants:Bra021379.1-P	InterPro:EF-hand-dom_pair
InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0000325	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810
GO:GO:0008150	GO:GO:0043269	InterPro:IPR002048	UniProt:M4DXY3	PFAM:PF13499	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR44256	PANTHER:PTHR44256:SF1	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002544CD0
SEG:seg	:	:	:	:	:

Description

AT3G03000 (E=2e-073) | calmodulin, putative

Coordinates

chrA01:+:25475070..25475579

Molecular Weight (calculated)

18652.8 Da

IEP (calculated)

4.222

GRAVY (calculated)

-0.453

Length

169 amino acids

Sequence
(BLAST)

001: MSRDDGDKPS PAPGKKLGDE QLAELREIFR SYDQNNDGSL TELELAALLR SLGLKPSQDQ LDTLIHKADR NNNGIIEFSE FVALVEPDLV KCPYTEDQLK
101: AIFKMFDRDG NGYITAAELA HSMAKLGHAL TAEELTGMIR EADRDGDGCI DFQEFVQAIT SAAFDNAWG

Best Arabidopsis Sequence Match ( AT3G03000.1 )
(BLAST)

001: MSCDGGKPAP AKLGDEQLAE LREIFRSFDQ NKDGSLTELE LGSLLRSLGL KPSQDQLDTL IQKADRNNNG LVEFSEFVAL VEPDLVKCPY TDDQLKAIFR
101: MFDRDGNGYI TAAELAHSMA KLGHALTAEE LTGMIKEADR DGDGCIDFQE FVQAITSAAF DNAWG

Arabidopsis Description

CML18Probable calcium-binding protein CML18 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.