Factsheet for Bra012910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra002327.1-P
Bra020125.1-P
Bra021117.1-P
Bra027190.1-P
Bra027232.1-P
Bra035427.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	Bra035427.1-P	AT1G59750.1	17675404
AT3G50060.1	Bra001598.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra021117.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra027232.1-P	AT3G15540.1	17675404
AT3G50060.1	Bra027190.1-P	AT3G16120.1	21798944
AT3G50060.1	Bra002327.1-P	AT5G20730.1	17675404
AT3G50060.1	Bra020125.1-P	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23023	Canola	nucleus	97.61	98.62
CDY02098	Canola	nucleus	98.29	98.29
Bra036048.1-P	Field mustard	nucleus	73.72	81.2
AT3G50060.1	Thale cress	nucleus	80.55	78.41
Bra029990.1-P	Field mustard	nucleus	75.77	75.51
Bra012149.1-P	Field mustard	nucleus	62.12	61.49
KRH61351	Soybean	nucleus	46.08	52.12
Bra017813.1-P	Field mustard	nucleus	46.76	51.7
KRH05621	Soybean	nucleus	46.08	50.37
KRH15420	Soybean	nucleus	46.76	50.18
GSMUA_Achr4P20150_001	Banana	nucleus	45.05	49.07
Bra032176.1-P	Field mustard	nucleus	48.46	48.63
Bra010593.1-P	Field mustard	nucleus	48.12	46.23
GSMUA_Achr3P13070_001	Banana	nucleus	45.39	45.86
GSMUA_Achr1P26140_001	Banana	nucleus	44.03	45.74
Zm00001d005300_P001	Maize	nucleus	44.03	45.26
GSMUA_Achr9P22600_001	Banana	nucleus	44.37	45.14
Bra011749.1-P	Field mustard	nucleus	49.49	44.21
GSMUA_Achr4P12950_001	Banana	nucleus	39.59	43.61
GSMUA_Achr4P09450_001	Banana	nucleus	44.71	43.38
Os09t0106700-01	Rice	nucleus	47.1	43.26
GSMUA_Achr1P09750_001	Banana	nucleus	43.69	43.1
VIT_03s0180g00210.t01	Wine grape	nucleus	44.37	42.9
GSMUA_Achr3P28230_001	Banana	nucleus	41.98	42.71
GSMUA_Achr8P25220_001	Banana	nucleus	42.32	41.89
TraesCS5B01G157300.1	Wheat	nucleus	47.78	41.79
Zm00001d019712_P001	Maize	nucleus	48.46	41.16
TraesCS5A01G159600.1	Wheat	nucleus	47.1	41.07
GSMUA_AchrUn_...	Banana	nucleus	39.25	40.64
TraesCS5D01G164600.1	Wheat	nucleus	47.44	40.52
EER98550	Sorghum	nucleus	47.44	37.98
HORVU5Hr1G049880.1	Barley	plastid	46.08	31.84
Bra039036.1-P	Field mustard	nucleus	20.82	31.61
Bra015992.1-P	Field mustard	nucleus	22.18	28.51
Bra008096.1-P	Field mustard	nucleus	22.53	28.21
Bra001323.1-P	Field mustard	nucleus	29.69	25.97
Bra037004.1-P	Field mustard	nucleus	21.16	25.73
Bra011441.1-P	Field mustard	nucleus	21.84	25.7
Bra034565.1-P	Field mustard	nucleus	21.84	25.5
Bra016575.1-P	Field mustard	nucleus	20.14	24.38
Bra031008.1-P	Field mustard	nucleus	20.48	24.29
Bra034057.1-P	Field mustard	nucleus	32.08	24.29
Bra007186.1-P	Field mustard	nucleus	30.72	24.26
Bra025652.1-P	Field mustard	nucleus	20.82	23.55
Bra033078.1-P	Field mustard	nucleus	22.87	23.43
Bra003995.1-P	Field mustard	nucleus	23.55	23.23
Bra004394.1-P	Field mustard	nucleus	23.89	21.88
Bra005006.1-P	Field mustard	nucleus	29.01	21.36
Bra002107.1-P	Field mustard	nucleus	22.18	20.06
Bra023637.1-P	Field mustard	nucleus	21.16	19.5
Bra006422.1-P	Field mustard	nucleus	20.82	19.49
Bra016285.1-P	Field mustard	nucleus	22.18	18.41

Protein Annotations

EnsemblPlants:Bra012910.1	EnsemblPlants:Bra012910.1-P	EnsemblPlantsGene:Bra012910	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF691	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI00025405F6	UniProt:M4D8V0	MapMan:15.5.2.1	:	:

Description

AT3G50060 (E=2e-104) MYB77 | MYB77; DNA binding / transcription factor

Coordinates

chrA03:-:21573456..21574337

Molecular Weight (calculated)

32248.9 Da

IEP (calculated)

5.569

GRAVY (calculated)

-0.576

Length

293 amino acids

Sequence
(BLAST)

001: MADRVKGPWS EEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSAEEDETIL SARAKFGNRW ATIARLLNGR TDNAVKNHWN
101: STLKRKFVGG GGGGDCDLVV VTAEEDRRKK RRSVSSESAP LVDTGLYMSP ESPTGVSDSS TIPSPVAAQL FKPMPVSGGF TVPSPVEMSS SEEDPATSLS
201: LSLSLPGADV SQESRNNSLL FPRFESQMKI INVEESEEGR RGEFMRVVQE MIKAEVRSYM SEIQINSGGF VVGGLYETGN GGFRDSGFVT KVE

Best Arabidopsis Sequence Match ( AT3G50060.1 )
(BLAST)

001: MADRVKGPWS QEEDEQLRRM VEKYGPRNWS AISKSIPGRS GKSCRLRWCN QLSPEVEHRP FSPEEDETIV TARAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCSGG VAVTTVTETE EDQDRPKKRR SVSFDSAFAP VDTGLYMSPE SPNGIDVSDS STIPSPSSPV AQLFKPMPIS GGFTVVPQPL PVEMSSSSED
201: PPTSLSLSLP GAENTSSSHN NNNNALMFPR FESQMKINVE ERGEGRRGEF MTVVQEMIKA EVRSYMAEMQ KTSGGFVVGG LYESGGNGGF RDCGVITPKV
301: E

Arabidopsis Description

MYB77Transcription factor MYB77 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN12]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.