Factsheet for Bra016285.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46444	Canola	nucleus	100.0	100.0
CDY44993	Canola	nucleus	96.32	96.32
AT1G26780.2	Thale cress	nucleus	83.29	81.89
Bra003995.1-P	Field mustard	nucleus	49.29	58.59
Bra004394.1-P	Field mustard	nucleus	50.14	55.31
Bra039036.1-P	Field mustard	nucleus	24.65	45.08
Bra015992.1-P	Field mustard	nucleus	28.05	43.42
Bra008096.1-P	Field mustard	nucleus	28.05	42.31
Os08t0435700-00	Rice	nucleus	30.88	42.25
Bra016575.1-P	Field mustard	nucleus	27.48	40.08
Bra031008.1-P	Field mustard	nucleus	28.05	40.08
Bra034565.1-P	Field mustard	nucleus	26.06	36.65
Bra011441.1-P	Field mustard	nucleus	25.78	36.55
GSMUA_Achr6P02580_001	Banana	nucleus	36.26	36.16
GSMUA_Achr5P23290_001	Banana	nucleus	30.88	36.09
Bra025652.1-P	Field mustard	nucleus	26.35	35.91
Bra033078.1-P	Field mustard	nucleus	28.05	34.62
Bra037004.1-P	Field mustard	nucleus	23.51	34.44
Bra002107.1-P	Field mustard	nucleus	31.16	33.95
Bra023637.1-P	Field mustard	nucleus	30.03	33.33
TraesCS3B01G473600.1	Wheat	nucleus	33.43	33.33
Bra006422.1-P	Field mustard	nucleus	28.9	32.59
TraesCS3D01G432300.2	Wheat	nucleus	32.58	32.49
TraesCS3A01G439500.1	Wheat	nucleus	32.58	32.49
Solyc05g007870.1.1	Tomato	nucleus	37.96	32.13
VIT_01s0026g02600.t01	Wine grape	nucleus	41.36	31.95
Zm00001d032194_P002	Maize	nucleus, plastid	34.28	31.68
KRH50566	Soybean	nucleus	39.09	31.65
PGSC0003DMT400047415	Potato	nucleus	37.96	31.24
KRH74887	Soybean	plastid	40.23	30.54
KRH70748	Soybean	nucleus	39.66	29.98
HORVU3Hr1G096010.6	Barley	nucleus	32.01	29.58
KRG89586	Soybean	nucleus	39.38	28.6
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	33.14	24.89
Bra036048.1-P	Field mustard	nucleus	18.13	24.06
Bra017813.1-P	Field mustard	nucleus	17.28	23.02
Bra012910.1-P	Field mustard	nucleus	18.41	22.18
Bra012149.1-P	Field mustard	nucleus	18.41	21.96
Bra032176.1-P	Field mustard	nucleus	18.13	21.92
Bra029990.1-P	Field mustard	nucleus	17.85	21.43
Bra010593.1-P	Field mustard	nucleus	17.56	20.33
Bra001323.1-P	Field mustard	nucleus	19.26	20.3
Bra011749.1-P	Field mustard	nucleus	18.7	20.12
Bra007186.1-P	Field mustard	nucleus	20.68	19.68
Bra034057.1-P	Field mustard	nucleus	20.4	18.6
Bra005006.1-P	Field mustard	nucleus	20.96	18.59
OQU80507	Sorghum	nucleus	34.56	17.86
Os08t0435725-00	Rice	cytosol	2.27	8.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra016285	EnsemblPlants:Bra016285.1	EnsemblPlants:Bra016285.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0008150	GO:GO:0009653	GO:GO:0010199
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4DIF8	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF473	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002546028
SEG:seg	:	:	:	:	:

Description

AT1G26780 (E=2e-149) MYB117, AtMYB117 | myb family transcription factor (MYB117)

Coordinates

chrA08:+:17704767..17706153

Molecular Weight (calculated)

40822.6 Da

IEP (calculated)

7.112

GRAVY (calculated)

-0.879

Length

353 amino acids

Sequence
(BLAST)

001: MFISEKQRWT DEVAAARREA SSWDFPFNDI NVQHHRRCNT SHEFDILKSP LGDNVEGSNN HNPNYSNNES GKKETTDSGQ SWSSSSSKPS VLGRGHWRPA
101: EDVKLKELVA IYGPQNWNLI AEKLQGRSGK SCRLRWFNQL DPRINRRAFT EDEEERLMQA HRLYGNKWAM IARLFPGRTD NSVKNHWHVI MARKYREHSS
201: AYRRRKLMIN NPLKPQLSNH PSPNPNHHSF ISTHHYFTQP FHEFNLTHHL VNNASITPDH NQLVLPIHCF QGYESNETPM VVSMFGNQIM GGDNVDVMSE
301: GLYEYPYIDS TSHEKGVPNE PMSWIGMEGE DEEVVEKAKQ QPHFFDFLGL GTA

Best Arabidopsis Sequence Match ( AT1G26780.2 )
(BLAST)

001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA

Arabidopsis Description

MYB117MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.