CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50566	Soybean	nucleus	79.63	88.76
VIT_01s0026g02600.t01	Wine grape	nucleus	54.73	58.21
KRH70748	Soybean	nucleus	46.91	48.82
KRH74887	Soybean	plastid	46.3	48.39
GSMUA_Achr6P02580_001	Banana	nucleus	33.74	46.33
Os08t0435700-00	Rice	nucleus	24.49	46.12
GSMUA_Achr5P23290_001	Banana	nucleus	28.19	45.36
KRH09502	Soybean	nucleus	21.81	45.3
KRH38975	Soybean	nucleus	22.02	45.15
KRG94450	Soybean	nucleus	13.99	43.04
Bra003995.1-P	Field mustard	nucleus	26.13	42.76
CDY07345	Canola	nucleus	26.13	42.62
CDY67868	Canola	nucleus	26.13	42.62
CDY40941	Canola	nucleus	27.57	41.88
CDX95921	Canola	nucleus	27.57	41.88
Bra004394.1-P	Field mustard	nucleus	27.57	41.88
AT1G69560.2	Thale cress	nucleus	29.01	40.75
TraesCS3B01G473600.1	Wheat	nucleus	29.63	40.68
TraesCS3A01G439500.1	Wheat	nucleus	29.42	40.4
CDY50737	Canola	nucleus	28.4	40.12
TraesCS3D01G432300.2	Wheat	nucleus	29.22	40.11
CDY46444	Canola	nucleus	28.6	39.38
CDY44993	Canola	nucleus	28.6	39.38
Bra016285.1-P	Field mustard	nucleus	28.6	39.38
AT1G26780.2	Thale cress	nucleus	29.01	39.28
KRG94926	Soybean	nucleus	30.25	38.89
KRH37830	Soybean	nucleus	11.32	38.73
KRH64970	Soybean	nucleus	31.07	37.28
Zm00001d032194_P002	Maize	nucleus, plastid	29.01	36.91
Solyc05g007870.1.1	Tomato	nucleus	31.28	36.45
PGSC0003DMT400047415	Potato	nucleus	31.48	35.66
KRH53362	Soybean	nucleus	23.46	34.44
KRH15916	Soybean	nucleus	17.08	34.3
KRH64569	Soybean	nucleus	23.46	33.73
HORVU3Hr1G096010.6	Barley	nucleus	26.13	33.25
KRH61246	Soybean	nucleus	13.37	30.95
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	29.42	30.43
KRH51945	Soybean	nucleus	13.79	30.32
KRH61351	Soybean	nucleus	14.61	27.41
KRH05732	Soybean	nucleus	13.79	27.13
KRH15420	Soybean	nucleus	15.02	26.74
KRH05621	Soybean	nucleus	14.61	26.49
KRH14928	Soybean	nucleus	12.76	26.05
KRH73284	Soybean	nucleus	12.35	24.29
KRH28419	Soybean	nucleus	14.2	23.23
KRH57983	Soybean	nucleus	13.99	23.05
KRH77058	Soybean	nucleus	13.99	22.3
KRG88785	Soybean	nucleus	15.84	21.88
OQU80507	Sorghum	nucleus	30.66	21.82
KRH75766	Soybean	nucleus	15.64	21.71
KRH15016	Soybean	nucleus	16.26	20.1
KRH73115	Soybean	nucleus	15.43	18.8
Os08t0435725-00	Rice	cytosol	3.5	17.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100804537	MapMan:15.5.2.1	EMBL:ACUP02012229	EnsemblPlantsGene:GLYMA_20G034100	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7N163	EnsemblPlants:KRG89586	ProteinID:KRG89586
ProteinID:KRG89586.1	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF473
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000233DAF5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr20:+:4723603..4726128

Molecular Weight (calculated)

54112.2 Da

IEP (calculated)

6.768

GRAVY (calculated)

-0.801

Length

486 amino acids

Sequence
(BLAST)

001: MKAWPARVIY PSSQENTNSL TRYPSSSSHS SSPPSMGMVY ADMDSLSLCS HYGTVVSSHH QDCYVSNGGT NWGFPFMREC PNNSDDVAEE EEGKGSDSST
101: GEDSDKVNHH ANNSNDENNP NENNSNSGGS GHSKLCARGH WRPAEDSKLK ELVALYGPQN WNLIAEKLEG RSGKSCRLRW FNQLDPRINR RAFSEEEEER
201: LMQAHRIYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR EQSSAYRRRR LSQSSSVYRR VDEINTTITT TNSIVVSRDT EQQAPPPPPY CVNLSNNGGL
301: ANNIINNNNN INMMSSFPYA AASFHGGVVP SSGGIEFGLN SSPHMTTAKE PFSTTKLAPP HIALYPQQTS LDFFSGVRSS SDMVGEYFGQ NLHHQQQQPS
401: SGFYPQYPQY VMLMNHHHQQ NNHNNFYGFS NSTSQILLGH SEASLSSSVA AEEHRDHQNL SSDQCPPDAT TTIPPPFIDF LGVGAT

Best Arabidopsis Sequence Match ( AT1G69560.2 )
(BLAST)

001: MMFKVIFNIC SSPPMRMEMV HADVASLSIT PCFPSSLSSS SHHHYNQQQH CIMSEDQHHS MDQTTSSDYF SLNIDNAQHL RSYYTSHREE DMNPNLSDYS
101: NCNKKDTTVY RSCGHSSKAS VSRGHWRPAE DTKLKELVAV YGPQNWNLIA EKLQGRSGKS CRLRWFNQLD PRINRRAFTE EEEERLMQAH RLYGNKWAMI
201: ARLFPGRTDN SVKNHWHVIM ARKFREQSSS YRRRKTMVSL KPLINPNPHI FNDFDPTRLA LTHLASSDHK QLMLPVPCFP GYDHENESPL MVDMFETQMM
301: VGDYIAWTQE ATTFDFLNQT GKSEIFERIN EEKKPPFFDF LGLGTV

Arabidopsis Description

MYB105myb domain protein 105 [Source:TAIR;Acc:AT1G69560]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.