CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51945	Soybean	nucleus	88.1	83.71
KRH37830	Soybean	nucleus	48.57	71.83
VIT_18s0001g11170.t01	Wine grape	nucleus	62.86	57.64
KRH05732	Soybean	nucleus	64.76	55.06
PGSC0003DMT400020635	Potato	nucleus	64.76	54.18
Solyc04g079360.1.1	Tomato	nucleus	64.29	53.57
KRH14928	Soybean	nucleus	43.33	38.24
KRH61351	Soybean	nucleus	45.71	37.07
KRH73284	Soybean	nucleus	42.86	36.44
KRH05621	Soybean	nucleus	45.24	35.45
KRH15420	Soybean	nucleus	44.76	34.43
KRH57983	Soybean	nucleus	47.14	33.56
KRH28419	Soybean	nucleus	46.19	32.66
KRH77058	Soybean	nucleus	46.19	31.8
KRG94450	Soybean	nucleus	21.43	28.48
KRH09502	Soybean	nucleus	28.57	25.64
KRH38975	Soybean	nucleus	28.57	25.32
KRG88785	Soybean	nucleus	41.9	25.0
KRH75766	Soybean	nucleus	41.43	24.86
KRH15916	Soybean	nucleus	25.24	21.9
KRH15016	Soybean	nucleus	40.48	21.63
KRH53362	Soybean	nucleus	31.43	19.94
KRH64569	Soybean	nucleus	31.9	19.82
KRH73115	Soybean	nucleus	36.67	19.3
KRG94926	Soybean	nucleus	31.9	17.72
KRH64970	Soybean	nucleus	31.43	16.3
KRH50566	Soybean	nucleus	31.9	15.37
KRH74887	Soybean	plastid	32.86	14.84
KRH70748	Soybean	nucleus	31.9	14.35
KRG89586	Soybean	nucleus	30.95	13.37

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100781727	MapMan:15.5.2.1	EMBL:ACUP02002159	EnsemblPlantsGene:GLYMA_04G036700	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1JTH1	InterPro:IPR017930	EnsemblPlants:KRH61246	ProteinID:KRH61246
ProteinID:KRH61246.1	EMBL:KT031187	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF611	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0001BA8A09	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:2900153..2900785

Molecular Weight (calculated)

23680.4 Da

IEP (calculated)

7.993

GRAVY (calculated)

-0.854

Length

210 amino acids

Sequence
(BLAST)

001: MEEMNRSSSS TSSSSHCCSL ESNHRSPNKP DRIKGPWSAQ EDRILTRLVE QYGPRNWSLI SRYIKGRSGK SCRLRWCNQL SPTVEHRPFS TQEDETIIAA
101: HARYGNRWAT IARLLPGRTD NAVKNHWNST LKRRAKGINV NVNDADNEDD PLTALTLAPP GIANATLTED AVPDHRASPE SAAEGFWDMM RDVIAREVRE
201: YVSSNFSDNN

Best Arabidopsis Sequence Match ( AT2G23290.1 )
(BLAST)

001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE

Arabidopsis Description

AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.