CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09502	Soybean	nucleus	89.24	60.26
KRH38975	Soybean	nucleus	81.01	54.01
KRH15916	Soybean	nucleus	39.24	25.62
KRH37830	Soybean	nucleus	22.15	24.65
KRH53362	Soybean	nucleus	48.1	22.96
KRH64569	Soybean	nucleus	48.1	22.49
KRH61246	Soybean	nucleus	28.48	21.43
KRH51945	Soybean	nucleus	27.85	19.91
KRH61351	Soybean	nucleus	30.38	18.53
KRH15420	Soybean	nucleus	31.01	17.95
KRH05621	Soybean	nucleus	30.38	17.91
KRH05732	Soybean	nucleus	27.85	17.81
KRG94926	Soybean	nucleus	40.51	16.93
KRH14928	Soybean	nucleus	25.32	16.81
KRH50566	Soybean	nucleus	44.94	16.28
KRH73284	Soybean	nucleus	25.32	16.19
KRH64970	Soybean	nucleus	41.14	16.05
KRH28419	Soybean	nucleus	28.48	15.15
KRH77058	Soybean	nucleus	28.48	14.75
KRH57983	Soybean	nucleus	27.22	14.58
KRH74887	Soybean	plastid	41.77	14.19
KRG89586	Soybean	nucleus	43.04	13.99
KRH70748	Soybean	nucleus	41.14	13.92
KRH75766	Soybean	nucleus	29.11	13.14
KRG88785	Soybean	nucleus	28.48	12.78
KRH15016	Soybean	nucleus	30.38	12.21
KRH73115	Soybean	nucleus	30.38	12.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EMBL:ACUP02011961	EnsemblPlantsGene:GLYMA_19G085700	GO:GO:0000981	GO:GO:0001135
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565	GO:GO:0044212
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K7MXB7	EnsemblPlants:KRG94450	ProteinID:KRG94450	ProteinID:KRG94450.1
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF665	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0002964EA4	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:30598845..30601339

Molecular Weight (calculated)

18736.3 Da

IEP (calculated)

9.907

GRAVY (calculated)

-0.700

Length

158 amino acids

Sequence
(BLAST)

001: MWLYSPEFEG IIWKSCRLRW FNQLDPRINR NPFTEEEEER LLASHRIHGN RWAVIARHFP GRTDNAVKNH WHVIMARIRR ERSKINNPKL QPLFAPNLKD
101: DLEAIPSFVE KYYEKYSHPC VTLTHSSFQF PGKKFYFQDP SSAGSTVPPV SIAERKEL

Best Arabidopsis Sequence Match ( AT1G17950.1 )
(BLAST)

001: MMCSRGHWRP AEDEKLRELV EQFGPHNWNA IAQKLSGRSG KSCRLRWFNQ LDPRINRNPF TEEEEERLLA SHRIHGNRWS VIARFFPGRT DNAVKNHWHV
101: IMARRGRERS KLRPRGLGHD GTVAATGMIG NYKDCDKERR LATTTAINFP YQFSHINHFQ VLKEFLTGKI GFRNSTTPIQ EGAIDQTKRP MEFYNFLQVN
201: TDSKIHELID NSRKDEEEDV DQNNRIPNEN CVPFFDFLSV GNSASQGLC

Arabidopsis Description

MYB52Transcription factor MYB52 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0C4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.