CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94926	Soybean	nucleus	87.65	93.92
Solyc10g081320.1.1	Tomato	nucleus	40.99	52.04
PGSC0003DMT400072258	Potato	nucleus	40.74	51.4
KRH38975	Soybean	nucleus	26.91	45.99
KRH09502	Soybean	nucleus	26.42	45.73
KRG94450	Soybean	nucleus	16.05	41.14
CDX85443	Canola	nucleus	31.11	41.04
CDY16884	Canola	nucleus	31.36	40.71
CDY02687	Canola	nucleus	30.86	40.32
Bra006422.1-P	Field mustard	nucleus	31.11	40.26
Bra023637.1-P	Field mustard	nucleus	31.6	40.25
AT5G17800.1	Thale cress	nucleus	31.85	39.94
CDX78761	Canola	nucleus	30.86	39.94
Bra002107.1-P	Field mustard	nucleus	31.85	39.81
CDY38460	Canola	nucleus	31.85	39.81
CDY69058	Canola	nucleus	25.93	39.77
CDX70776	Canola	nucleus	30.62	39.62
KRH37830	Soybean	nucleus	12.84	36.62
VIT_08s0056g01190.t01	Wine grape	golgi	38.77	35.2
KRH15916	Soybean	nucleus	20.99	35.12
KRH53362	Soybean	nucleus	27.65	33.84
KRH50566	Soybean	nucleus	35.8	33.26
KRH64569	Soybean	nucleus	27.41	32.84
KRH61246	Soybean	nucleus	16.3	31.43
KRG89586	Soybean	nucleus	37.28	31.07
KRH70748	Soybean	nucleus	34.32	29.76
KRH74887	Soybean	plastid	34.07	29.68
KRH51945	Soybean	nucleus	16.05	29.41
KRH61351	Soybean	nucleus	18.27	28.57
KRH15420	Soybean	nucleus	18.52	27.47
KRH05621	Soybean	nucleus	17.78	26.87
KRH14928	Soybean	nucleus	15.31	26.05
KRH05732	Soybean	nucleus	15.8	25.91
KRH28419	Soybean	nucleus	18.52	25.25
KRH73284	Soybean	nucleus	15.31	25.1
KRH57983	Soybean	nucleus	18.27	25.08
KRH77058	Soybean	nucleus	18.27	24.26
KRH75766	Soybean	nucleus	18.77	21.71
KRG88785	Soybean	nucleus	18.52	21.31
KRH15016	Soybean	nucleus	17.78	18.32
KRH73115	Soybean	nucleus	16.3	16.54

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100776882	MapMan:15.5.2.1	EMBL:ACUP02001303	ncoils:Coil	EnsemblPlantsGene:GLYMA_03G007500
GO:GO:0000981	GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006357	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154
GO:GO:0043565	GO:GO:0044212	InterPro:Homeobox-like_sf	UniProt:I1JK61	InterPro:IPR017930	EnsemblPlants:KRH64970
ProteinID:KRH64970	ProteinID:KRH64970.1	EMBL:KT031183	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF941	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00018772E1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:698125..700974

Molecular Weight (calculated)

44782.8 Da

IEP (calculated)

5.825

GRAVY (calculated)

-0.748

Length

405 amino acids

Sequence
(BLAST)

001: MSSSQHLNNV GEDSSSRDMS FFPPSSRYVG SSQTQTPPLS LSHGNGVEGS NSNPEMGLLI FASTVFQQPQ ECRGTKRAID EEEEEEEEDE EEEEGVDEIE
101: NNKNLCLKLG GDEAQAAKSS ASGKTKLCAR GHWRPAEDEK LKELVAQYGP QNWNLIAENL EGRSGKSCRL RWFNQLDPRI NRRSFSEEEE ERLLTAHRMY
201: GNKWAMIARL FPGRTDNAVK NHWHVIMARR QREHSSRVYR RRKLVVNETV LPKGLNLTLS NNNAGSESTI SSTIDESAST CTNLSLTPPS SAKVTPPFGR
301: LFDHHGPSQN HHQAFGSLIG QAIGDVSFNK KFCGASWNGV AYKKAEQVGK LKGVDQSNFS DANSEVSVSE SVATNRSNVS ISEESETVGD KINMPFIDFL
401: GVGAT

Best Arabidopsis Sequence Match ( AT1G26780.2 )
(BLAST)

001: MFITEKQVWM DEIVARRASS SWDFPFNDIN IHQHHHRHCN TSHEFEILKS PLGDVAVHEE ESNNNNPNFS NSESGKKETT DSGQSWSSSS SKPSVLGRGH
101: WRPAEDVKLK ELVSIYGPQN WNLIAEKLQG RSGKSCRLRW FNQLDPRINR RAFTEEEEER LMQAHRLYGN KWAMIARLFP GRTDNSVKNH WHVVMARKYR
201: EHSSAYRRRK LMSNNPLKPH LTNNHHPNPN PNYHSFISTN HYFAQPFPEF NLTHHLVNNA PITSDHNQLV LPFHCFQGYE NNEPPMVVSM FGNQMMVGDN
301: VGATSDALCN IPHIDPSNQE KPEPNDAMHW IGMDAVDEEV FEKAKQQPHF FDFLGLGTA

Arabidopsis Description

MYB117MYB117 [Source:UniProtKB/TrEMBL;Acc:A0A178WCI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.