Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85443 | Canola | nucleus | 74.92 | 78.83 |
| CDY02687 | Canola | nucleus | 75.23 | 78.39 |
| CDY16884 | Canola | nucleus | 73.99 | 76.6 |
| Bra023637.1-P | Field mustard | nucleus | 74.92 | 76.1 |
| CDX78761 | Canola | nucleus | 72.76 | 75.08 |
| Bra006422.1-P | Field mustard | nucleus | 72.76 | 75.08 |
| CDY38460 | Canola | nucleus | 74.3 | 74.07 |
| CDX70776 | Canola | nucleus | 71.52 | 73.8 |
| Bra002107.1-P | Field mustard | nucleus | 73.37 | 73.15 |
| CDY69058 | Canola | nucleus | 57.59 | 70.45 |
| AT1G73410.1 | Thale cress | nucleus | 31.89 | 42.39 |
| AT5G39700.1 | Thale cress | nucleus | 24.46 | 41.58 |
| AT1G17950.1 | Thale cress | nucleus | 31.27 | 40.56 |
| PGSC0003DMT400072258 | Potato | nucleus | 37.15 | 37.38 |
| AT4G33450.1 | Thale cress | nucleus | 28.48 | 36.8 |
| Solyc10g081320.1.1 | Tomato | nucleus | 35.91 | 36.36 |
| KRG94926 | Soybean | nucleus | 38.39 | 32.8 |
| AT3G29020.2 | Thale cress | nucleus | 30.34 | 32.13 |
| KRH64970 | Soybean | nucleus | 39.94 | 31.85 |
| AT1G69560.2 | Thale cress | nucleus | 33.75 | 31.5 |
| AT1G26780.2 | Thale cress | nucleus | 33.13 | 29.8 |
| VIT_08s0056g01190.t01 | Wine grape | golgi | 37.46 | 27.13 |
| AT2G23290.1 | Thale cress | nucleus | 21.98 | 22.98 |
| AT5G67300.1 | Thale cress | nucleus | 21.67 | 22.95 |
| AT4G37260.1 | Thale cress | nucleus | 22.29 | 22.5 |
| AT3G50060.1 | Thale cress | nucleus | 20.74 | 22.26 |
| AT2G39880.1 | Thale cress | nucleus | 21.98 | 19.35 |
| AT3G55730.1 | Thale cress | nucleus | 21.05 | 17.04 |
| AT3G09230.1 | Thale cress | nucleus | 20.12 | 16.54 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:831648 | ProteinID:AED92471.1 | EMBL:AF062891 | EMBL:AK176193 |
| EMBL:AK176277 | ArrayExpress:AT5G17800 | EnsemblPlantsGene:AT5G17800 | RefSeq:AT5G17800 | TAIR:AT5G17800 | RefSeq:AT5G17800-TAIR-G |
| EnsemblPlants:AT5G17800.1 | TAIR:AT5G17800.1 | EMBL:AY519627 | Unigene:At.7331 | Symbol:AtMYB56 | ProteinID:BAB09579.1 |
| GO:GO:0000003 | GO:GO:0000978 | GO:GO:0000981 | GO:GO:0001046 | GO:GO:0001135 | GO:GO:0001935 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009653 |
| GO:GO:0009719 | GO:GO:0009742 | GO:GO:0009791 | GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 |
| GO:GO:0040007 | GO:GO:0042803 | GO:GO:0043565 | GO:GO:0045893 | GO:GO:0048579 | GO:GO:0051782 |
| GO:GO:0071367 | GO:GO:0080060 | GO:GO:0080113 | GO:GO:1904961 | InterPro:Homeobox-like_sf | InterPro:IPR017930 |
| InterPro:Myb_dom | RefSeq:NP_197282.1 | PFAM:PF00249 | PO:PO:0000037 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006081 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020149 | PO:PO:0025022 | PFscan:PS51294 | PANTHER:PTHR10641 |
| PANTHER:PTHR10641:SF941 | UniProt:Q6R053 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI00001624BB |
| SEG:seg | : | : | : | : | : |
Description
MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
Coordinates
chr5:+:5877113..5879331
Molecular Weight (calculated)
36894.1 Da
IEP (calculated)
9.742
GRAVY (calculated)
-0.980
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.