Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07907 | Canola | nucleus | 63.1 | 74.7 |
| CDX73963 | Canola | nucleus | 63.36 | 74.33 |
| Bra001323.1-P | Field mustard | nucleus | 63.1 | 74.03 |
| CDY70901 | Canola | nucleus | 53.69 | 73.78 |
| CDY70773 | Canola | nucleus | 53.44 | 73.43 |
| Bra034057.1-P | Field mustard | nucleus | 69.72 | 70.8 |
| AT3G55730.1 | Thale cress | nucleus | 35.11 | 34.59 |
| AT3G50060.1 | Thale cress | nucleus | 23.92 | 31.23 |
| AT5G67300.1 | Thale cress | nucleus | 24.17 | 31.15 |
| AT2G23290.1 | Thale cress | nucleus | 24.43 | 31.07 |
| AT4G37260.1 | Thale cress | nucleus | 24.68 | 30.31 |
| AT2G39880.1 | Thale cress | nucleus | 28.24 | 30.25 |
| AT1G73410.1 | Thale cress | nucleus | 18.07 | 29.22 |
| AT4G33450.1 | Thale cress | nucleus | 17.81 | 28.0 |
| AT5G39700.1 | Thale cress | nucleus | 13.49 | 27.89 |
| AT1G17950.1 | Thale cress | nucleus | 17.3 | 27.31 |
| AT3G29020.2 | Thale cress | nucleus | 16.29 | 20.98 |
| AT1G69560.2 | Thale cress | nucleus | 17.81 | 20.23 |
| AT5G17800.1 | Thale cress | nucleus | 16.54 | 20.12 |
| AT1G26780.2 | Thale cress | nucleus | 18.32 | 20.06 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | EntrezGene:820079 | UniProt:A0A178VBI5 | ProteinID:AAF14022.1 | ProteinID:AEE74740.1 |
| ArrayExpress:AT3G09230 | EnsemblPlantsGene:AT3G09230 | RefSeq:AT3G09230 | TAIR:AT3G09230 | RefSeq:AT3G09230-TAIR-G | EnsemblPlants:AT3G09230.1 |
| TAIR:AT3G09230.1 | EMBL:AY550295 | Unigene:At.50162 | Symbol:AtMYB1 | ProteinID:BAA01730.1 | EMBL:BT026429 |
| GO:GO:0000981 | GO:GO:0001135 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006357 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009719 | GO:GO:0009751 | GO:GO:0009987 | GO:GO:0030154 | GO:GO:0043565 | GO:GO:0044212 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_187534.1 | ProteinID:OAP03690.1 | PFAM:PF00249 |
| PO:PO:0000293 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | UniProt:Q42575 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000009F710 | SEG:seg | : | : |
Description
MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
Coordinates
chr3:+:2833346..2835390
Molecular Weight (calculated)
42813.8 Da
IEP (calculated)
5.217
GRAVY (calculated)
-0.586
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.