Factsheet for Bra001323.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73963	Canola	nucleus	96.42	96.42
Bra034057.1-P	Field mustard	nucleus	83.88	72.61
AT3G09230.1	Thale cress	nucleus	74.03	63.1
Bra007186.1-P	Field mustard	nucleus	37.91	34.23
Bra005006.1-P	Field mustard	nucleus	38.51	32.41
Bra017813.1-P	Field mustard	nucleus	24.78	31.32
Bra036048.1-P	Field mustard	nucleus	24.78	31.2
Bra029990.1-P	Field mustard	nucleus	26.87	30.61
Bra032176.1-P	Field mustard	nucleus	26.57	30.48
Bra010593.1-P	Field mustard	nucleus	27.16	29.84
Bra012910.1-P	Field mustard	nucleus	25.97	29.69
Bra015992.1-P	Field mustard	nucleus	20.0	29.39
Bra008096.1-P	Field mustard	nucleus	20.3	29.06
Bra012149.1-P	Field mustard	nucleus	25.37	28.72
Bra011749.1-P	Field mustard	nucleus	28.06	28.66
Bra039036.1-P	Field mustard	nucleus	16.42	28.5
Bra031008.1-P	Field mustard	nucleus	20.9	28.34
Bra016575.1-P	Field mustard	nucleus	20.0	27.69
Bra025652.1-P	Field mustard	nucleus	20.0	25.87
Bra037004.1-P	Field mustard	nucleus	18.21	25.31
Bra011441.1-P	Field mustard	nucleus	18.51	24.9
Bra034565.1-P	Field mustard	nucleus	18.21	24.3
Bra003995.1-P	Field mustard	nucleus	19.1	21.55
Bra033078.1-P	Field mustard	nucleus	18.21	21.33
Bra006422.1-P	Field mustard	nucleus	19.4	20.77
Bra004394.1-P	Field mustard	nucleus	19.7	20.62
Bra002107.1-P	Field mustard	nucleus	18.81	19.44
Bra016285.1-P	Field mustard	nucleus	20.3	19.26
Bra023637.1-P	Field mustard	nucleus	18.21	19.18

Protein Annotations

EnsemblPlants:Bra001323.1	EnsemblPlants:Bra001323.1-P	EnsemblPlantsGene:Bra001323	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF524	PFAM:PF00249	PFscan:PS51294	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00025405B5	UniProt:M4CAU4	MapMan:15.5.2.1	:	:	:

Description

AT3G09230 (E=2e-135) AtMYB1 | AtMYB1 (myb domain protein 1); DNA binding / transcription factor

Coordinates

chrA03:-:15844303..15846085

Molecular Weight (calculated)

36720.1 Da

IEP (calculated)

7.212

GRAVY (calculated)

-0.547

Length

335 amino acids

Sequence
(BLAST)

001: MAGRGKERVK VAWSAEEDVV LSNLVEKFGP RNWSLLARSV PGRTGKSCRL RWCNQLDPSL KRNPFTEVED QAIITAHGIH GNKWSVIAKL LPGRTDNAIK
101: NHWNATLSRR CMDFEMLTTN NLVREDSGFD RTMNTIAASS EATFSSGGGG HVTTPLVSSD GKEATSMDVS EEQCEDKTNE EGNNDPPTLS RPVARLSSFN
201: AYNHMEGSSF SKFQSCKQDA AMLRLLEGAY SERFVPQKCG HGCCSDNPVN ISQKNSLLGP EFVDHLEPPT FPSYELAAIA TEISSLAWLR SGLESSSVRA
301: MEEAAGRLRP QGSRGHRDHC LASKQGKSIT NVLST

Best Arabidopsis Sequence Match ( AT3G09230.1 )
(BLAST)

001: MEAEIVRRSE VTGLRREVEE SSIGRGDCDG DGGDVGEDAA GFVGTSGRGR RDRVKGPWSK EEDDVLSELV KRLGARNWSF IARSIPGRSG KSCRLRWCNQ
101: LNPNLIRNSF TEVEDQAIIA AHAIHGNKWA VIAKLLPGRT DNAIKNHWNS ALRRRFIDFE KAKNIGTGSL VVDDSGFDRT TTVASSEETL SSGGGCHVTT
201: PIVSPEGKEA TTSMEMSEEQ CVEKTNGEGI SRQDDKDPPT LFRPVPRLSS FNACNHMEGS PSPHIQDQNQ LQSSKQDAAM LRLLEGAYSE RFVPQTCGGG
301: CCSNNPDGSF QQESLLGPEF VDYLDSPTFP SSELAAIATE IGSLAWLRSG LESSSVRVME DAVGRLRPQG SRGHRDHYLV SEQGTNITNV LST

Arabidopsis Description

MYB1Transcription factor MYB1 [Source:UniProtKB/Swiss-Prot;Acc:Q42575]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.