Factsheet for Bra006422.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78761	Canola	nucleus	99.04	99.04
CDX70776	Canola	nucleus	97.12	97.12
Bra023637.1-P	Field mustard	nucleus	76.04	74.84
Bra002107.1-P	Field mustard	nucleus	76.68	74.07
AT5G17800.1	Thale cress	nucleus	75.08	72.76
Bra016575.1-P	Field mustard	nucleus	32.59	42.15
Bra015992.1-P	Field mustard	nucleus	30.67	42.11
Bra039036.1-P	Field mustard	nucleus	25.56	41.45
Bra008096.1-P	Field mustard	nucleus	30.35	40.6
Bra031008.1-P	Field mustard	nucleus	31.95	40.49
PGSC0003DMT400072258	Potato	nucleus	37.7	36.76
Bra011441.1-P	Field mustard	nucleus	29.07	36.55
Bra037004.1-P	Field mustard	nucleus	27.8	36.1
Solyc10g081320.1.1	Tomato	nucleus	36.74	36.05
Bra034565.1-P	Field mustard	nucleus	28.75	35.86
Bra025652.1-P	Field mustard	nucleus	29.39	35.52
Bra003995.1-P	Field mustard	nucleus	32.27	34.01
KRG94926	Soybean	nucleus	38.98	32.28
Bra004394.1-P	Field mustard	nucleus	32.91	32.19
KRH64970	Soybean	nucleus	40.26	31.11
Bra033078.1-P	Field mustard	nucleus	28.11	30.77
Bra016285.1-P	Field mustard	nucleus	32.59	28.9
VIT_08s0056g01190.t01	Wine grape	golgi	38.98	27.35
Bra017813.1-P	Field mustard	nucleus	20.77	24.53
Bra010593.1-P	Field mustard	nucleus	22.04	22.62
Bra032176.1-P	Field mustard	nucleus	21.09	22.6
Bra036048.1-P	Field mustard	nucleus	18.85	22.18
Bra012149.1-P	Field mustard	nucleus	20.45	21.62
Bra011749.1-P	Field mustard	nucleus	22.04	21.04
Bra012910.1-P	Field mustard	nucleus	19.49	20.82
Bra029990.1-P	Field mustard	nucleus	18.85	20.07
Bra001323.1-P	Field mustard	nucleus	20.77	19.4
Bra034057.1-P	Field mustard	nucleus	22.04	17.83
Bra005006.1-P	Field mustard	nucleus	22.36	17.59
Bra007186.1-P	Field mustard	nucleus	20.45	17.25

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra006422	EnsemblPlants:Bra006422.1	EnsemblPlants:Bra006422.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CQD3
InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF941	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000253FDE9	SEG:seg	:	:

Description

AT5G17800 (E=4e-117) AtMYB56 | AtMYB56 (myb domain protein 56); DNA binding / transcription factor

Coordinates

chrA03:+:3453512..3455223

Molecular Weight (calculated)

35449.6 Da

IEP (calculated)

10.073

GRAVY (calculated)

-0.836

Length

313 amino acids

Sequence
(BLAST)

001: MDPKLIEKVL TGNKTIKLSR RFEEANNFGS PPNSHTNLSL ARNHLHNKSY SVLERGENEN SLKRRGNNGM NKKLCSRGHW RPTEDAKLKE LVAQFGPQNW
101: NLIAHHLLGR SGKSCRLRWC NQLDPRINKK AFTEEEESRL LTAHRAYGNK WSLISRFFPG RTDNAVKNHW HVVMARRTRA SERQQALHAP SGNAEMTVLS
201: VYRYNRGGFF GRVAEGTLVN EADDDDGSAV STCTTELSLT PPSSTHQPRF LHDDNTLASG KDGQCVQRAE VNGIYSKKMD HQNHHTTTVS EREVEMKTKS
301: GFYFFDFLGV GAS

Best Arabidopsis Sequence Match ( AT5G17800.1 )
(BLAST)

001: MNPNLLEKDL RGKETTNGSI RYKEANNFRS LPNSHTAACK TSLNNPSISR NHPHNKSASV LESEDEHGNE RGENEKSLRM RGKSGINTKV CSRGHWRPTE
101: DAKLKELVAQ FGPQNWNLIS NHLLGRSGKS CRLRWFNQLD PRINKRAFTE EEEFRLLAAH RAYGNKWALI SRLFPGRTDN AVKNHWHVIM ARRTRESQRQ
201: RQQPPPTLSR DAEMTVSSSC RYNQGKFINE EDDDDDVSAV STCTTELSLT PPSSAYQPRF FNYDSTLASG KDGQCVQRAE VNGIYGKKMD HQNHHTISVS
301: ERKVEMKMRS GYYYFDFLGV GAS

Arabidopsis Description

MYB56Transcription factor MYB56 [Source:UniProtKB/Swiss-Prot;Acc:Q6R053]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.