Factsheet for Bra005006.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74825	Canola	nucleus	98.24	97.51
CDY20494	Canola	nucleus	81.91	88.59
Bra007186.1-P	Field mustard	nucleus	46.23	49.6
AT2G39880.1	Thale cress	nucleus	39.7	43.05
GSMUA_Achr9P03720_001	Banana	nucleus	33.92	41.93
VIT_13s0019g03200.t01	Wine grape	nucleus	39.45	41.53
Solyc05g052850.2.1	Tomato	nucleus	38.19	40.64
GSMUA_Achr6P33470_001	Banana	nucleus	22.86	40.44
PGSC0003DMT400069921	Potato	nucleus	37.94	40.37
Bra001323.1-P	Field mustard	nucleus	32.41	38.51
KRH15016	Soybean	nucleus	37.19	37.66
Bra034057.1-P	Field mustard	nucleus	33.42	34.37
KRH73115	Soybean	nucleus	32.66	32.58
OQU87862	Sorghum	nucleus	31.41	31.33
Bra039036.1-P	Field mustard	nucleus	15.08	31.09
Bra032176.1-P	Field mustard	nucleus	22.61	30.82
Zm00001d012379_P001	Maize	nucleus	30.9	30.67
Bra017813.1-P	Field mustard	nucleus	20.35	30.57
Os01t0850400-01	Rice	nucleus	31.66	30.51
Bra012149.1-P	Field mustard	nucleus	22.61	30.41
Bra010593.1-P	Field mustard	nucleus	22.61	29.51
Bra012910.1-P	Field mustard	nucleus	21.36	29.01
Bra011749.1-P	Field mustard	nucleus	23.62	28.66
Bra036048.1-P	Field mustard	nucleus	19.1	28.57
Bra008096.1-P	Field mustard	nucleus	16.08	27.35
Bra015992.1-P	Field mustard	nucleus	15.58	27.19
TraesCS3A01G365200.1	Wheat	nucleus	31.41	27.06
TraesCS3B01G397100.1	Wheat	nucleus	31.66	26.92
Bra029990.1-P	Field mustard	nucleus	19.85	26.87
TraesCS3D01G358400.1	Wheat	nucleus	31.66	26.87
GSMUA_Achr5P28780_001	Banana	nucleus	26.63	26.7
HORVU3Hr1G085570.1	Barley	plastid	30.9	26.68
Bra016575.1-P	Field mustard	nucleus	16.08	26.45
Bra037004.1-P	Field mustard	nucleus	15.58	25.73
Bra031008.1-P	Field mustard	nucleus	15.58	25.1
Bra025652.1-P	Field mustard	nucleus	16.33	25.1
Bra011441.1-P	Field mustard	nucleus	15.58	24.9
Bra034565.1-P	Field mustard	nucleus	15.58	24.7
Bra004394.1-P	Field mustard	nucleus	18.84	23.44
Bra003995.1-P	Field mustard	nucleus	17.34	23.23
Bra033078.1-P	Field mustard	nucleus	16.08	22.38
Bra006422.1-P	Field mustard	nucleus	17.59	22.36
Bra002107.1-P	Field mustard	nucleus	17.34	21.3
Bra016285.1-P	Field mustard	nucleus	18.59	20.96
Bra023637.1-P	Field mustard	nucleus	16.33	20.44

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	EnsemblPlantsGene:Bra005006	EnsemblPlants:Bra005006.1	EnsemblPlants:Bra005006.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0007275	GO:GO:0008150	GO:GO:0009555
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CLB9	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR10641	PANTHER:PTHR10641:SF524	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00025473D7
SEG:seg	:	:	:	:	:

Description

AT2G39880 (E=4e-104) MYB25, AtMYB25 | MYB25 (myb domain protein 25); DNA binding / transcription factor

Coordinates

chrA05:+:2932092..2934035

Molecular Weight (calculated)

43985.7 Da

IEP (calculated)

7.762

GRAVY (calculated)

-0.565

Length

398 amino acids

Sequence
(BLAST)

001: MNSETVNQTP PTTPSTPFYD SSEDAINAAV DFELAAVREV GGDSNGSNGG GGRSKAKGPW STEQDAVLTR LVNKLGPRNW TLIARGIPGR SGKSCRLRWC
101: NQLDPCLKRK PFTDEEENLL MSAHAVHGNK WSVIAKLLPG RTDNAIKNHW NSALKRKHAD LWNNHHSISN TVNASSSRKE ETNHHPPSVS TDVKMEDVAS
201: KPREGKPGVY RPVARLGAFS VYRPGYMNQR VDPCEGPLVQ AARPGSLGGQ FLQSLCYQTN VPSRCGHGCC NQQPEKRLSS SVLGPEFVDY EEPSSVGLDQ
301: ELVSIATDLN NIAWIRSGLN NSYAREVGQR LNADSRFHFE HARARGKFTG MVNNVLVLYF DDKVRDFDVP FQTFESVLLA IELGFYMGEK EEPVVLTC

Best Arabidopsis Sequence Match ( AT3G55730.1 )
(BLAST)

001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS

Arabidopsis Description

MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.