Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P16490_001 | Banana | nucleus | 30.22 | 40.48 |
| KRH75766 | Soybean | nucleus | 47.56 | 30.57 |
| GSMUA_Achr9P03720_001 | Banana | nucleus | 43.56 | 30.43 |
| KRG88785 | Soybean | nucleus | 47.56 | 30.4 |
| PGSC0003DMT400052395 | Potato | nucleus | 50.67 | 30.08 |
| GSMUA_Achr11P... | Banana | nucleus | 24.44 | 30.05 |
| GSMUA_Achr9P29090_001 | Banana | nucleus | 27.56 | 29.52 |
| Solyc09g011780.2.1 | Tomato | nucleus | 49.78 | 29.47 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 35.11 | 29.37 |
| GSMUA_Achr3P07700_001 | Banana | nucleus | 26.67 | 29.27 |
| GSMUA_Achr9P15750_001 | Banana | nucleus | 27.11 | 28.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.0 | 28.62 |
| GSMUA_Achr5P28780_001 | Banana | nucleus | 49.33 | 27.96 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 32.89 | 27.82 |
| VIT_13s0019g03200.t01 | Wine grape | nucleus | 46.22 | 27.51 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 35.11 | 27.43 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 36.0 | 27.27 |
| Zm00001d012379_P001 | Maize | nucleus | 48.44 | 27.18 |
| Solyc05g052850.2.1 | Tomato | nucleus | 44.89 | 27.01 |
| GSMUA_Achr9P08480_001 | Banana | nucleus | 30.67 | 26.95 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 33.78 | 26.95 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 34.67 | 26.9 |
| PGSC0003DMT400069921 | Potato | nucleus | 44.44 | 26.74 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 34.22 | 26.74 |
| VIT_08s0007g01540.t01 | Wine grape | nucleus | 48.44 | 26.59 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 35.56 | 26.49 |
| OQU87862 | Sorghum | nucleus | 46.67 | 26.32 |
| Bra007186.1-P | Field mustard | nucleus | 42.67 | 25.88 |
| CDY27271 | Canola | nucleus | 42.67 | 25.74 |
| CDX72208 | Canola | nucleus | 41.78 | 25.54 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 33.33 | 25.34 |
| Os01t0850400-01 | Rice | nucleus | 45.78 | 24.94 |
| AT3G55730.1 | Thale cress | nucleus | 44.0 | 24.81 |
| KRH15016 | Soybean | nucleus | 43.11 | 24.68 |
| GSMUA_Achr10P... | Banana | nucleus | 28.0 | 24.23 |
| CDY20494 | Canola | nucleus | 39.11 | 23.91 |
| GSMUA_Achr6P17630_001 | Banana | nucleus | 27.56 | 23.57 |
| GSMUA_Achr3P18970_001 | Banana | nucleus | 27.11 | 23.28 |
| GSMUA_Achr11P... | Banana | nucleus | 28.44 | 23.27 |
| GSMUA_Achr5P27750_001 | Banana | nucleus | 25.78 | 23.02 |
| Bra005006.1-P | Field mustard | nucleus | 40.44 | 22.86 |
| KRH73115 | Soybean | nucleus | 40.44 | 22.81 |
| GSMUA_Achr6P15900_001 | Banana | nucleus | 27.56 | 22.55 |
| CDX74825 | Canola | nucleus | 40.0 | 22.44 |
| TraesCS3A01G365200.1 | Wheat | nucleus | 45.78 | 22.29 |
| AT2G39880.1 | Thale cress | nucleus | 35.56 | 21.8 |
| TraesCS3B01G397100.1 | Wheat | nucleus | 45.33 | 21.79 |
| TraesCS3D01G358400.1 | Wheat | nucleus | 45.33 | 21.75 |
| GSMUA_Achr5P23290_001 | Banana | nucleus | 28.89 | 21.52 |
| HORVU3Hr1G085570.1 | Barley | plastid | 43.56 | 21.26 |
| GSMUA_Achr10P... | Banana | nucleus | 28.0 | 20.72 |
| GSMUA_Achr9P17000_001 | Banana | nucleus | 28.0 | 20.72 |
| GSMUA_Achr9P04990_001 | Banana | nucleus | 27.11 | 20.2 |
| GSMUA_Achr10P... | Banana | nucleus | 28.44 | 19.94 |
| GSMUA_Achr3P09490_001 | Banana | nucleus | 28.0 | 19.75 |
| GSMUA_Achr6P02580_001 | Banana | nucleus | 30.22 | 19.21 |
| GSMUA_Achr6P32250_001 | Banana | nucleus | 26.67 | 17.34 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, golgi | 28.0 | 15.99 |
| GSMUA_Achr7P18390_001 | Banana | nucleus, plastid | 30.22 | 14.47 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P33470_001 | EnsemblPlants:GSMUA_Achr6T33470_001 | EnsemblPlantsGene:GSMUA_Achr6G33470_001 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF524 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000295ED99 | UniProt:M0TCE0 | MapMan:15.5.2.1 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G33470_001]
Coordinates
chr6:-:32493021..32498243
Molecular Weight (calculated)
24464.9 Da
IEP (calculated)
10.172
GRAVY (calculated)
-0.450
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSTLLTF ASLHRQQRLH ERSVDYGAQI AVKRSVVLLL FLRTQKVKER KLTEAPAMET VVDPAPSTAS PSSPVVIVDG QAAGSASAAA GEGSSGDGVV
101: RDGPPSGGGA AATEDRVKGP WSPEEDAILS RLVSKFGARN WSLIARGIPG RSGKSCRLRW CNQLDPYVKR RPFTDEEDRI IIAAHAIHGN KWASIARLLE
201: GRTDNAIKNH WNSTLRRRCN EEAEW
101: RDGPPSGGGA AATEDRVKGP WSPEEDAILS RLVSKFGARN WSLIARGIPG RSGKSCRLRW CNQLDPYVKR RPFTDEEDRI IIAAHAIHGN KWASIARLLE
201: GRTDNAIKNH WNSTLRRRCN EEAEW
001: MEGETHQSEP LPLASGDSDE GISAAIEAEL AELAAGDSSG GGGCGGGGGG IRSKVKGPWS TEEDAVLTKL VRKLGPRNWS LIARGIPGRS GKSCRLRWCN
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
101: QLDPCLKRKP FSDEEDRMII SAHAVHGNKW AVIAKLLTGR TDNAIKNHWN STLRRKYADL WNNGQWMANS VTTASVKNEN VDETTNPPSS KQQLPQGDIN
201: SSPPKPPQVS DVVMEEAANE PQEPQEQQEQ APPVVSNVPT ENNVFRPVAR VGAFSIYNPT SQKNGYRDYN IVPCEGPLIQ AAKPDSLAGK FLQSLCDEPQ
301: IPSKCGHGCS TLPAETKFSR NSVLGPEFVD YEEPSAVFNQ ELISIATDLN NIAWIKSGLD NAVVREAEQS LKMDNYNYND PRIKFTGMMP RQDFFCARS
Arabidopsis Description
MYB109MYB transcription factor-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LDW5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.