Factsheet for GSMUA_Achr4P20150_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P19900_001
GSMUA_Achr3P10240_001
GSMUA_Achr6P07390_001
GSMUA_Achr6P12780_001
GSMUA_Achr6P29070_001
GSMUA_Achr7P14400_001
GSMUA_Achr7P25190_001
GSMUA_Achr9P08310_001
GSMUA_Achr9P18170_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50060.1	GSMUA_Achr10P...	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P07390_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P12780_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr6P29070_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr9P08310_001	AT1G59750.1	17675404
AT3G50060.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr10P...	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr2P19900_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr7P14400_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr7P25190_001	AT3G16120.1	21798944
AT3G50060.1	GSMUA_Achr3P10240_001	AT5G20730.1	17675404
AT3G50060.1	GSMUA_Achr9P18170_001	AT5G20730.1	17675404

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13070_001	Banana	nucleus	75.84	70.34
GSMUA_Achr1P26140_001	Banana	nucleus	66.54	63.48
KRH05621	Soybean	nucleus	56.51	56.72
GSMUA_Achr1P09750_001	Banana	nucleus	62.08	56.23
GSMUA_Achr4P09450_001	Banana	nucleus	62.08	55.3
GSMUA_Achr9P22600_001	Banana	nucleus	58.74	54.86
GSMUA_AchrUn_...	Banana	nucleus	57.62	54.77
KRH15420	Soybean	nucleus	54.65	53.85
KRH61351	Soybean	nucleus	50.56	52.51
GSMUA_Achr4P12950_001	Banana	nucleus	51.67	52.26
Os09t0106700-01	Rice	nucleus	61.71	52.04
CDY12830	Canola	nucleus	48.7	51.78
Zm00001d005300_P001	Maize	nucleus	54.28	51.23
GSMUA_Achr8P25220_001	Banana	nucleus	56.13	51.01
CDY01420	Canola	nucleus	49.44	50.57
GSMUA_Achr3P28230_001	Banana	nucleus	53.9	50.35
Bra012149.1-P	Field mustard	nucleus	55.02	50.0
TraesCS5B01G157300.1	Wheat	nucleus	59.48	47.76
TraesCS5A01G159600.1	Wheat	nucleus	59.11	47.32
AT5G67300.1	Thale cress	nucleus	53.16	46.89
VIT_03s0180g00210.t01	Wine grape	nucleus	52.79	46.86
Bra036048.1-P	Field mustard	nucleus	46.1	46.62
CDY30608	Canola	nucleus	45.72	46.42
Zm00001d019712_P001	Maize	nucleus	59.48	46.38
TraesCS5D01G164600.1	Wheat	nucleus	59.11	46.36
CDY57355	Canola	nucleus	47.58	46.04
CDY23023	Canola	nucleus	49.07	45.52
Bra012910.1-P	Field mustard	nucleus	49.07	45.05
CDY02098	Canola	nucleus	49.07	45.05
EER98550	Sorghum	nucleus	60.59	44.54
AT3G50060.1	Thale cress	nucleus	49.81	44.52
Bra029990.1-P	Field mustard	nucleus	45.72	41.84
GSMUA_Achr3P16490_001	Banana	nucleus	24.54	39.29
HORVU5Hr1G049880.1	Barley	plastid	58.36	37.03
CDX68566	Canola	nucleus	41.64	35.67
GSMUA_Achr6P33470_001	Banana	nucleus	29.37	35.11
GSMUA_Achr3P07700_001	Banana	nucleus	25.65	33.66
GSMUA_Achr9P29090_001	Banana	nucleus	24.91	31.9
GSMUA_Achr9P15750_001	Banana	nucleus	24.91	31.75
GSMUA_Achr11P...	Banana	nucleus	21.19	31.15
GSMUA_Achr9P03720_001	Banana	nucleus	34.57	28.88
GSMUA_Achr6P17630_001	Banana	nucleus	27.51	28.14
GSMUA_Achr9P08480_001	Banana	nucleus	26.02	27.34
GSMUA_Achr10P...	Banana	nucleus	25.65	26.54
GSMUA_Achr3P18970_001	Banana	nucleus	25.65	26.34
GSMUA_Achr6P15900_001	Banana	nucleus	26.39	25.82
GSMUA_Achr5P27750_001	Banana	nucleus	22.68	24.21
GSMUA_Achr11P...	Banana	nucleus	24.54	24.0
GSMUA_Achr9P04990_001	Banana	nucleus	26.77	23.84
GSMUA_Achr9P17000_001	Banana	nucleus	26.77	23.68
GSMUA_Achr10P...	Banana	nucleus	26.77	23.68
GSMUA_Achr6P32250_001	Banana	nucleus	30.11	23.41
GSMUA_Achr3P09490_001	Banana	nucleus	27.51	23.2
GSMUA_Achr10P...	Banana	nucleus	27.51	23.05
GSMUA_Achr5P23290_001	Banana	nucleus	25.28	22.52
GSMUA_Achr5P28780_001	Banana	nucleus	32.34	21.91
GSMUA_Achr6P02580_001	Banana	nucleus	27.14	20.62
GSMUA_Achr11P...	Banana	endoplasmic reticulum, golgi	28.25	19.29
GSMUA_Achr7P18390_001	Banana	nucleus, plastid	24.91	14.26

Protein Annotations

EnsemblPlants:GSMUA_Achr4P20150_001	EnsemblPlants:GSMUA_Achr4T20150_001	EnsemblPlantsGene:GSMUA_Achr4G20150_001	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	PFAM:PF00249	PFscan:PS51294	SEG:seg	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI0002966847	UniProt:M0SQH8	MapMan:15.5.2.1	:	:

Description

Transcription factor MYB44 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20150_001]

Coordinates

chr4:-:20875637..20876939

Molecular Weight (calculated)

29425.6 Da

IEP (calculated)

9.651

GRAVY (calculated)

-0.690

Length

269 amino acids

Sequence
(BLAST)

001: MAATVVGSRS KDVDRIKGPW SPEEDEALQK LVQRHGPRNW SLISKSIPGR SGKSCRLRWC NQLSPQVEHR PFTPEEDETI IRAHRRFGNK WATIARLLSG
101: RTDNAVKNHW NSTLKRRTSS DGPAISSSGA GLCLSPGSPS ASELSDSSHH SLPMTSPVST ASHIYRPVPR TGGVNTEDPV TSLSLSLPGS ETMDIPDHHH
201: STGDDNGRHK QLDLAPAELL AVMQEMIRKE VRSYMTSLER SGAACTESRP PSESVRNAGI KRIGVAKME

Best Arabidopsis Sequence Match ( AT4G37260.1 )
(BLAST)

001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME

Arabidopsis Description

MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.