Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d019712_P001 | Maize | nucleus | 81.75 | 67.54 |
| Os09t0106700-01 | Rice | nucleus | 71.93 | 64.26 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 72.28 | 61.49 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 72.28 | 61.31 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 72.63 | 60.35 |
| KRH05621 | Soybean | nucleus | 52.28 | 55.6 |
| GSMUA_Achr4P20150_001 | Banana | nucleus | 51.23 | 54.28 |
| KRH61351 | Soybean | nucleus | 48.42 | 53.28 |
| KRH57983 | Soybean | nucleus | 54.39 | 52.54 |
| GSMUA_Achr1P26140_001 | Banana | nucleus | 51.23 | 51.77 |
| KRH15420 | Soybean | nucleus | 49.47 | 51.65 |
| GSMUA_Achr3P13070_001 | Banana | nucleus | 51.93 | 51.03 |
| KRH28419 | Soybean | nucleus | 52.28 | 50.17 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 55.09 | 50.16 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 54.74 | 50.0 |
| GSMUA_Achr4P12950_001 | Banana | nucleus | 46.67 | 50.0 |
| KRH77058 | Soybean | nucleus | 53.33 | 49.84 |
| GSMUA_Achr3P28230_001 | Banana | nucleus | 50.18 | 49.65 |
| PGSC0003DMT400008569 | Potato | nucleus | 55.44 | 49.38 |
| GSMUA_Achr4P09450_001 | Banana | nucleus | 52.28 | 49.34 |
| Solyc04g078420.1.1 | Tomato | nucleus | 56.14 | 48.78 |
| CDY22442 | Canola | nucleus | 47.02 | 48.73 |
| GSMUA_Achr1P09750_001 | Banana | nucleus | 50.53 | 48.48 |
| CDY12830 | Canola | nucleus | 42.81 | 48.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.72 | 48.06 |
| GSMUA_Achr9P22600_001 | Banana | nucleus | 47.72 | 47.22 |
| CDY44045 | Canola | nucleus | 47.02 | 47.02 |
| Zm00001d015614_P001 | Maize | nucleus | 49.82 | 46.71 |
| HORVU5Hr1G049880.1 | Barley | plastid | 69.47 | 46.7 |
| Bra012149.1-P | Field mustard | nucleus | 48.42 | 46.62 |
| VIT_03s0180g00210.t01 | Wine grape | nucleus | 49.47 | 46.53 |
| CDY01420 | Canola | nucleus | 42.81 | 46.39 |
| CDY38933 | Canola | nucleus | 47.37 | 46.23 |
| Bra032176.1-P | Field mustard | nucleus | 47.37 | 46.23 |
| CDX89554 | Canola | nucleus | 47.37 | 46.08 |
| GSMUA_Achr8P25220_001 | Banana | nucleus | 47.02 | 45.27 |
| CDY23023 | Canola | nucleus | 45.61 | 44.83 |
| CDX72621 | Canola | nucleus | 41.05 | 44.15 |
| Bra017813.1-P | Field mustard | nucleus | 41.05 | 44.15 |
| CDY29542 | Canola | nucleus | 41.05 | 44.15 |
| CDX75635 | Canola | nucleus | 46.32 | 44.15 |
| Zm00001d046632_P001 | Maize | nucleus | 47.02 | 44.08 |
| CDY02098 | Canola | nucleus | 45.26 | 44.03 |
| Bra012910.1-P | Field mustard | nucleus | 45.26 | 44.03 |
| Bra010593.1-P | Field mustard | nucleus | 47.02 | 43.93 |
| AT5G67300.1 | Thale cress | nucleus | 47.02 | 43.93 |
| CDY57355 | Canola | nucleus | 42.81 | 43.88 |
| Bra036048.1-P | Field mustard | nucleus | 40.0 | 42.86 |
| Zm00001d036768_P001 | Maize | nucleus | 46.32 | 42.86 |
| CDX69287 | Canola | nucleus | 45.96 | 42.81 |
| AT2G23290.1 | Thale cress | nucleus | 46.32 | 42.72 |
| CDY30608 | Canola | nucleus | 39.65 | 42.64 |
| Bra029990.1-P | Field mustard | nucleus | 43.51 | 42.18 |
| Solyc02g092930.1.1 | Tomato | nucleus | 52.63 | 41.55 |
| AT3G50060.1 | Thale cress | nucleus | 43.86 | 41.53 |
| PGSC0003DMT400064306 | Potato | mitochondrion, nucleus | 53.33 | 40.97 |
| AT4G37260.1 | Thale cress | nucleus | 45.61 | 40.62 |
| Bra011749.1-P | Field mustard | nucleus | 46.32 | 40.24 |
| Zm00001d041935_P001 | Maize | nucleus | 34.74 | 37.5 |
| CDX68566 | Canola | nucleus | 37.89 | 34.39 |
| Zm00001d004681_P001 | Maize | nucleus | 22.46 | 33.51 |
| Zm00001d041818_P001 | Maize | nucleus | 22.81 | 28.89 |
| Zm00001d013399_P001 | Maize | nucleus | 21.75 | 25.83 |
| Zm00001d033815_P001 | Maize | nucleus | 22.46 | 25.81 |
| Zm00001d037999_P001 | Maize | nucleus | 26.32 | 25.77 |
| Zm00001d040426_P001 | Maize | nucleus | 24.91 | 25.54 |
| Zm00001d037994_P001 | Maize | nucleus | 32.98 | 25.47 |
| Zm00001d040423_P001 | Maize | nucleus | 25.61 | 24.5 |
| Zm00001d040428_P001 | Maize | nucleus | 24.21 | 24.38 |
| Zm00001d049079_P001 | Maize | nucleus | 23.51 | 24.19 |
| Zm00001d008251_P002 | Maize | nucleus | 24.91 | 23.75 |
| Zm00001d037998_P001 | Maize | nucleus | 26.32 | 23.36 |
| Zm00001d012379_P001 | Maize | nucleus | 31.58 | 22.44 |
| Zm00001d032194_P002 | Maize | nucleus, plastid | 24.21 | 18.06 |
Protein Annotations
| Gene3D:1.10.10.60 | EntrezGene:100502222 | MapMan:15.5.2.1 | EMBL:BT087447 | UniProt:C4J9F0 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | EMBL:KJ727495 |
| InterPro:Myb_dom | ProteinID:ONM20787.1 | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR10641 | PANTHER:PTHR10641:SF691 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0001A4C766 | EnsemblPlantsGene:Zm00001d005300 | EnsemblPlants:Zm00001d005300_P001 |
| EnsemblPlants:Zm00001d005300_T001 | SEG:seg | : | : | : | : |
Description
MYB-transcription factor 139Transcription factor MYB44
Coordinates
chr2:+:168527945..168528802
Molecular Weight (calculated)
30877.4 Da
IEP (calculated)
10.125
GRAVY (calculated)
-0.672
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASPSPSGS GGGKAGVDRI KGPWSPEEDE ALQRLVRRHG ARNWSLISRS VPGRSGKSCR LRWCNQLSPR VEHRPFTPDE DDAILRAHAR FGNKWATIAR
101: LLSGRTDNAI KNHWNSTLKR ERERKREYYA DARPGPGDQR SLKRTSSDGP PGSPSGSDLS DSSHQSLPTV MPSAASTAVT SQQQLQHVYY RPVPRAGGVV
201: LLPVAPPSPQ APPATSLSLS LSLPGLDQQP EPSPPPPPTP QAQASSPLSA EFLLMMQEMI RIEVRNYMSG SGFDAHAVMG MAEID
101: LLSGRTDNAI KNHWNSTLKR ERERKREYYA DARPGPGDQR SLKRTSSDGP PGSPSGSDLS DSSHQSLPTV MPSAASTAVT SQQQLQHVYY RPVPRAGGVV
201: LLPVAPPSPQ APPATSLSLS LSLPGLDQQP EPSPPPPPTP QAQASSPLSA EFLLMMQEMI RIEVRNYMSG SGFDAHAVMG MAEID
001: MSGSTRKEMD RIKGPWSPEE DDLLQSLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRGFTA EEDDTIILAH ARFGNKWATI ARLLNGRTDN
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
101: AIKNHWNSTL KRKCSGGGGG GEEGQSCDFG GNGGYDGNLT DEKPLKRRAS GGGGVVVVTA LSPTGSDVSE QSQSSGSVLP VSSSCHVFKP TARAGGVVIE
201: SSSPEEEEKD PMTCLRLSLP WVNESTTPPE LFPVKREEEE EKEREISGLG GDFMTVVQEM IKTEVRSYMA DLQLGNGGGA GGGASSCMVQ GTNGRNVGFR
301: EFIGLGRIE
Arabidopsis Description
AtMYB70At2g23280 [Source:UniProtKB/TrEMBL;Acc:O22179]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.