Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
24351685
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g092930.1.1 | Tomato | nucleus | 93.53 | 96.12 |
| VIT_07s0129g01050.t01 | Wine grape | nucleus | 53.1 | 63.14 |
| KRH28419 | Soybean | nucleus | 49.6 | 61.95 |
| KRH77058 | Soybean | nucleus | 50.67 | 61.64 |
| VIT_18s0001g09850.t01 | Wine grape | nucleus | 50.4 | 59.74 |
| CDY22442 | Canola | nucleus | 43.67 | 58.91 |
| KRH57983 | Soybean | nucleus | 46.63 | 58.64 |
| CDX75635 | Canola | nucleus | 46.9 | 58.19 |
| CDY44045 | Canola | nucleus | 44.47 | 57.89 |
| CDY38933 | Canola | nucleus | 45.01 | 57.19 |
| Bra032176.1-P | Field mustard | nucleus | 45.01 | 57.19 |
| CDX89554 | Canola | nucleus | 44.74 | 56.66 |
| CDX69287 | Canola | nucleus | 46.09 | 55.88 |
| Bra010593.1-P | Field mustard | nucleus | 45.01 | 54.75 |
| PGSC0003DMT400008569 | Potato | nucleus | 47.17 | 54.69 |
| AT2G23290.1 | Thale cress | nucleus | 45.28 | 54.37 |
| Os09t0106700-01 | Rice | nucleus | 46.09 | 53.6 |
| Zm00001d005300_P001 | Maize | nucleus | 40.97 | 53.33 |
| AT4G37260.1 | Thale cress | nucleus | 45.82 | 53.12 |
| Bra011749.1-P | Field mustard | nucleus | 46.9 | 53.05 |
| TraesCS5B01G157300.1 | Wheat | nucleus | 46.36 | 51.34 |
| TraesCS5A01G159600.1 | Wheat | nucleus | 46.09 | 50.89 |
| Zm00001d019712_P001 | Maize | nucleus | 46.9 | 50.43 |
| TraesCS5D01G164600.1 | Wheat | nucleus | 46.09 | 49.85 |
| EER98550 | Sorghum | nucleus | 47.71 | 48.36 |
| PGSC0003DMT400020635 | Potato | nucleus | 28.57 | 42.23 |
| HORVU5Hr1G049880.1 | Barley | plastid | 44.74 | 39.15 |
| PGSC0003DMT400052395 | Potato | nucleus | 29.38 | 28.76 |
| PGSC0003DMT400079714 | Potato | nucleus | 18.06 | 27.46 |
| PGSC0003DMT400069921 | Potato | nucleus | 25.88 | 25.67 |
| PGSC0003DMT400063862 | Potato | nucleus | 19.14 | 23.51 |
| PGSC0003DMT400072258 | Potato | nucleus | 19.41 | 22.43 |
| PGSC0003DMT400047415 | Potato | nucleus | 19.41 | 16.78 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | ProteinID:AAG08959 | ProteinID:AAG08959.1 | EMBL:AF122051 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1CC46 |
| InterPro:Myb_dom | PFAM:PF00249 | EnsemblPlantsGene:PGSC0003DMG400024983 | PGSC:PGSC0003DMG400024983 | EnsemblPlants:PGSC0003DMT400064306 | PFscan:PS51294 |
| PANTHER:PTHR10641 | PANTHER:PTHR10641:SF940 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI000295816B |
| SEG:seg | : | : | : | : | : |
Description
Tuber-specific and sucrose-responsive element binding factor [Source:PGSC_GENE;Acc:PGSC0003DMG400024983]
Coordinates
chr2:-:43290372..43292067
Molecular Weight (calculated)
41163.5 Da
IEP (calculated)
8.651
GRAVY (calculated)
-0.750
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSKRDMDR VKGPWSPEED ELLQQLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP QVEHRAFTPE EDETIIRAHA RFGNKWATIA RLLNGRTDNA
101: IKNHWNSTLK RKCSSLSADE GNELADQIFE NQQPPLKRSV SAGSAMPVSG FHFSPGSPSG SDSDSSLHVT SSSQSHVFKP VARTGGVFPQ SIDISSPPVD
201: PPTSLSLSLP GVDLAEFSNR SADSTQSKNP FQLLLPPMQI PPPPPPPPPP PPQATTVPFE RVSAIQQSLQ NPDFGKNAGG EQPDKVFVPF SQELLGVMQE
301: MIKTEVRNYM MGVEQKQQFQ QQQQHYQQQP QQFQQQNHQL PSGLGLGLCM QQASDGFRDR AANRMRLSKF D
101: IKNHWNSTLK RKCSSLSADE GNELADQIFE NQQPPLKRSV SAGSAMPVSG FHFSPGSPSG SDSDSSLHVT SSSQSHVFKP VARTGGVFPQ SIDISSPPVD
201: PPTSLSLSLP GVDLAEFSNR SADSTQSKNP FQLLLPPMQI PPPPPPPPPP PPQATTVPFE RVSAIQQSLQ NPDFGKNAGG EQPDKVFVPF SQELLGVMQE
301: MIKTEVRNYM MGVEQKQQFQ QQQQHYQQQP QQFQQQNHQL PSGLGLGLCM QQASDGFRDR AANRMRLSKF D
001: MSNPTRKNME RIKGPWSPEE DDLLQRLVQK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS PEVEHRAFSQ EEDETIIRAH ARFGNKWATI SRLLNGRTDN
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
101: AIKNHWNSTL KRKCSVEGQS CDFGGNGGYD GNLGEEQPLK RTASGGGGVS TGLYMSPGSP SGSDVSEQSS GGAHVFKPTV RSEVTASSSG EDPPTYLSLS
201: LPWTDETVRV NEPVQLNQNT VMDGGYTAEL FPVRKEEQVE VEEEEAKGIS GGFGGEFMTV VQEMIRTEVR SYMADLQRGN VGGSSSGGGG GGSCMPQSVN
301: SRRVGFREFI VNQIGIGKME
Arabidopsis Description
MYB73MYB73 [Source:UniProtKB/TrEMBL;Acc:A0A178V4E7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.