Factsheet for PGSC0003DMT400013629

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007017
PGSC0003DMT400015076
PGSC0003DMT400022249
PGSC0003DMT400029374
PGSC0003DMT400030287
PGSC0003DMT400035458
PGSC0003DMT400042946
PGSC0003DMT400047670
PGSC0003DMT400067737
PGSC0003DMT400070968
PGSC0003DMT400072397

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	PGSC0003DMT400029374	AT1G30860.1	21798944
AT2G30580.1	PGSC0003DMT400035458	AT1G30860.1	21798944
AT2G30580.1	PGSC0003DMT400042946	AT2G40620.1	21798944
AT2G30580.1	PGSC0003DMT400070968	AT2G40620.1	21798944
AT2G30580.1	PGSC0003DMT400047670	AT2G46550.1	21798944
AT2G30580.1	PGSC0003DMT400007017	AT3G09980.1	21798944
AT2G30580.1	PGSC0003DMT400072397	AT3G09980.1	21798944
AT2G30580.1	PGSC0003DMT400022249	AT4G13540.1	21798944
AT2G30580.1	PGSC0003DMT400030287	AT4G13540.1	21798944
AT2G30580.1	PGSC0003DMT400015076	AT5G22310.1	21798944
AT2G30580.1	PGSC0003DMT400067737	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008600.2.1	Tomato	nucleus	93.86	65.79
Bra022807.1-P	Field mustard	cytosol	12.97	54.29
PGSC0003DMT400038984	Potato	nucleus	66.55	45.35
VIT_07s0141g00610.t01	Wine grape	nucleus	63.14	43.02
PGSC0003DMT400051660	Potato	nucleus	63.48	41.15
Bra021651.1-P	Field mustard	nucleus	44.03	36.65
KRG95629	Soybean	nucleus	51.54	35.28
KRH67309	Soybean	nucleus	52.56	34.61
KRH32110	Soybean	nucleus	47.78	32.63
CDY47131	Canola	nucleus	46.08	32.37
CDY10748	Canola	nucleus	46.42	32.3
KRH71326	Soybean	mitochondrion, nucleus	46.76	31.79
CDY23989	Canola	nucleus	45.73	31.24
CDX97807	Canola	nucleus	44.03	31.01
AT1G06770.1	Thale cress	nucleus	44.37	30.88
Bra018304.1-P	Field mustard	nucleus	45.39	30.79
AT2G30580.1	Thale cress	nucleus	44.03	30.71
CDY29659	Canola	nucleus	43.34	30.17
Os12t0600200-03	Rice	cytosol, nucleus	34.81	29.65
GSMUA_Achr9P10710_001	Banana	nucleus	37.88	27.89
GSMUA_Achr5P03230_001	Banana	nucleus	36.86	24.55
TraesCS5A01G378600.1	Wheat	nucleus	40.96	23.62
PGSC0003DMT400087288	Potato	plastid	13.31	23.49
TraesCS5D01G388500.1	Wheat	nucleus	41.3	23.27
TraesCS5B01G382100.1	Wheat	nucleus	40.61	23.06
CDY06664	Canola	nucleus	30.03	22.98
HORVU5Hr1G093720.3	Barley	nucleus	40.27	22.65
GSMUA_Achr4P17750_001	Banana	nucleus	30.03	22.62
PGSC0003DMT400087291	Potato	nucleus	23.89	22.51
Zm00001d033322_P001	Maize	nucleus	37.88	21.1
TraesCS5D01G069800.1	Wheat	nucleus	33.45	20.76
TraesCS5A01G058000.1	Wheat	nucleus	33.45	20.76
Zm00001d030985_P001	Maize	nucleus	33.45	20.59
Zm00001d041405_P001	Maize	nucleus	33.79	20.37
KXG37982	Sorghum	nucleus	35.84	20.35
TraesCS5B01G065600.1	Wheat	cytosol	32.42	20.13
HORVU5Hr1G014430.6	Barley	nucleus	32.08	19.83
Bra015525.1-P	Field mustard	cytosol	27.65	19.33
TraesCS5A01G381800.1	Wheat	mitochondrion	23.55	18.4
PGSC0003DMT400015657	Potato	nucleus, plastid	24.57	18.23
TraesCS5D01G391100.1	Wheat	mitochondrion	23.21	18.13
Os03t0632800-01	Rice	nucleus	26.62	18.06
TraesCS5B01G385300.1	Wheat	mitochondrion	24.23	17.75
OQU79520	Sorghum	nucleus	31.74	16.85
Bra015526.1-P	Field mustard	nucleus	13.31	15.92
KXG37592	Sorghum	mitochondrion, nucleus	25.6	15.37
HORVU5Hr1G094160.2	Barley	plastid	22.18	14.67
PGSC0003DMT400010761	Potato	nucleus	24.57	14.57
Zm00001d013303_P001	Maize	nucleus	15.36	11.57
Zm00001d033967_P001	Maize	nucleus	13.31	10.21
Os03t0741700-00	Rice	cytosol	4.1	6.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400013629	EnsemblPlantsGene:PGSC0003DMG400005328	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PGSC:PGSC0003DMG400005328	SEG:seg
UniParc:UPI000295F9A3	UniProt:M1A337	MapMan:12.3.5.1.1.1	:	:	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005328]

Coordinates

chr6:-:1307587..1314099

Molecular Weight (calculated)

32518.5 Da

IEP (calculated)

9.174

GRAVY (calculated)

-0.651

Length

293 amino acids

Sequence
(BLAST)

001: MTGRRSKSVA RKALRGSTFS TEKAIKNEED SGEEPDSSSS PDTFTKSSQS KRQNYSNAEP SSHPTSDKGT DNGTEQQEGK VDLWKPLDCL VEVANKNKCS
101: RFTSQGSVCK TESLHCHDKE HGQKLKVQGD KYSCVPVPAE SEKTKKLRRI RRKKASTFGE FSISPQAVLD SISVKCERRT NPIWFSLVAS EDQDGSAPLP
201: QISAGYLRIK DGNIPVLFIQ KYLMKKLNLS SEDEVEIRYM GQLIVPTLQL NSLVDMWLQS TTSERVPAIV GSSANDFVMV LAYARKVPSL MSS

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.