Factsheet for PGSC0003DMT400010761

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400087291	Potato	nucleus	21.26	33.76
PGSC0003DMT400087288	Potato	plastid	11.34	33.73
PGSC0003DMT400015657	Potato	nucleus, plastid	24.09	30.13
GSMUA_Achr9P10710_001	Banana	nucleus	23.68	29.4
PGSC0003DMT400038984	Potato	nucleus	24.7	28.37
Os12t0600200-03	Rice	cytosol, nucleus	18.42	26.45
PGSC0003DMT400051660	Potato	nucleus	23.48	25.66
Os03t0741700-00	Rice	cytosol	9.92	25.52
GSMUA_Achr5P03230_001	Banana	nucleus	22.47	25.23
PGSC0003DMT400013629	Potato	nucleus	14.57	24.57
TraesCS5D01G388500.1	Wheat	nucleus	24.7	23.46
VIT_05s0020g04730.t01	Wine grape	nucleus	22.47	23.42
KRG92425	Soybean	nucleus	19.84	23.0
TraesCS5B01G382100.1	Wheat	nucleus	23.68	22.67
GSMUA_Achr4P17750_001	Banana	nucleus	17.81	22.62
TraesCS5A01G378600.1	Wheat	nucleus	23.08	22.44
HORVU5Hr1G014430.6	Barley	nucleus	21.46	22.36
TraesCS5D01G069800.1	Wheat	nucleus	21.26	22.25
HORVU5Hr1G093720.3	Barley	nucleus	23.28	22.07
TraesCS5D01G391100.1	Wheat	mitochondrion	16.6	21.87
TraesCS5A01G381800.1	Wheat	mitochondrion	16.6	21.87
TraesCS5A01G058000.1	Wheat	nucleus	20.85	21.82
KRH34379	Soybean	nucleus	19.23	21.79
TraesCS5B01G385300.1	Wheat	mitochondrion	17.41	21.5
TraesCS5B01G065600.1	Wheat	cytosol	20.45	21.4
Zm00001d030985_P001	Maize	nucleus	20.45	21.22
Zm00001d033322_P001	Maize	nucleus	22.06	20.72
Zm00001d041405_P001	Maize	nucleus	20.24	20.58
CDY61240	Canola	nucleus	7.49	20.56
KXG37982	Sorghum	nucleus	21.46	20.54
HORVU5Hr1G094160.2	Barley	plastid	16.6	18.51
OQU79520	Sorghum	nucleus	20.45	18.3
KXG37592	Sorghum	mitochondrion, nucleus	18.02	18.24
Os03t0632800-01	Rice	nucleus	15.18	17.36
Zm00001d013303_P001	Maize	nucleus	13.56	17.22
Zm00001d033967_P001	Maize	nucleus	12.75	16.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400010761	EnsemblPlantsGene:PGSC0003DMG400004205	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	PFscan:PS50089	PGSC:PGSC0003DMG400004205
ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294AE1F	UniProt:M0ZYI7
MapMan:35.1	:	:	:	:	:

Description

Ring finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004205]

Coordinates

chr1:+:53386728..53391422

Molecular Weight (calculated)

54499.5 Da

IEP (calculated)

8.785

GRAVY (calculated)

-0.725

Length

494 amino acids

Sequence
(BLAST)

001: MNDFDKRLAS LKSVLTCGIC KKLCKDVTII EECCHRFCKT CITRRISKEK WNVCPECNMD LGVAPSQKIR SDHQMQGIRD IFSSKRRELI ELGLIEKSKK
101: DKPKKLARED IDLNYSAEML IDPSPPPPEP VVVATSSRRK EKSISSIVNT TPLVVDDKVS NQDNVSSSST GRGRGRGRGR GRGRRRGSSQ NNDNVVDLNN
201: GDAHPGSLTI PLHSSNDTHY KQQFESIGYA VESSKNDGIS KKIKSIEPLD GMNDLWEPLN NLVTKGDTLD NSKESVPKFI SSTPLINLDD YENEDDNDDE
301: EEDEEYVPSP KVKENKVSKQ SVVQAIEAPS SSHSNNIDKG KKGRRGRKKK GTNNLPPPPP VGGGVVGGGQ NINVAQVGVT TETTGGTSSG STRVVNERVH
401: PMWFTLVACD KQDVNKSSSY IKKYLAHKLS LQSEDEVEIH MLGMPIQPSL PLKHLAKLWL DVGPNSGKKL AKVGASAQEF VMVLNYSRSH PYLN

Best Arabidopsis Sequence Match ( AT1G06770.3 )
(BLAST)

001: MMIKVKKETM RACLSCSICD NILRDATTIS ECLHTFCRKC IYEKITEDEI ETCPVCNIDL GSTPLEKLRP DHNLQDLRAK IFALKRRKVK APGIVSLPGK
101: RKERSISSLV VSTPMVSAQA GTTRRRTKAP TRKELRNGSL AERTVKKEES SGDELLESTS SPDTLNKFTQ NKRQSKKSCK ESISNKENKD GDEPWDSKMD
201: WKPLNFLVEV ANGTKPLKSS ASQGSGSKSE HANVSRNQFQ GSKTKTKNKK RKCKREDDKS NNGDPTTSET VTPKRMRTTQ RKRSATTLGD SRNLPQPDES
301: SAKQERRNGP VWFSLVASND QEGGTSLPQI PANFLRIRDG NTTVSFIQKY LMRKLDLESE NEVRVFICTM ARERIERLNI MELICLVDKK WTYLWFMFR

Arabidopsis Description

DRIP1E3 ubiquitin protein ligase DRIP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.