Factsheet for GSMUA_Achr5P03230_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P08690_001
GSMUA_Achr1P08716_001
GSMUA_Achr1P11070_001
GSMUA_Achr2P20290_001
GSMUA_Achr3P18940_001
GSMUA_Achr4P33210_001
GSMUA_Achr6P08260_001
GSMUA_Achr6P16290_001
GSMUA_Achr7P00390_001
GSMUA_Achr8P16080_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	GSMUA_Achr4P33210_001	AT1G30860.1	21798944
AT2G30580.1	GSMUA_Achr7P00390_001	AT1G30860.1	21798944
AT2G30580.1	GSMUA_AchrUn_...	AT2G46550.1	21798944
AT2G30580.1	GSMUA_Achr2P20290_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr3P18940_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr8P16080_001	AT3G09980.1	21798944
AT2G30580.1	GSMUA_Achr1P11070_001	AT4G13540.1	21798944
AT2G30580.1	GSMUA_Achr6P08260_001	AT5G22310.1	21798944
AT2G30580.1	GSMUA_Achr6P16290_001	AT5G22310.1	21798944
AT3G23060.1	GSMUA_Achr1P08690_001	AT5G45490.1	21798944
AT3G23060.1	GSMUA_Achr1P08716_001	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P17750_001	Banana	nucleus	59.77	67.61
GSMUA_Achr9P10710_001	Banana	nucleus	53.18	58.79
GSMUA_Achr8P18360_001	Banana	cytosol	10.23	52.33
Bra022807.1-P	Field mustard	cytosol	7.95	50.0
GSMUA_Achr8P18370_001	Banana	mitochondrion, nucleus	37.73	50.0
VIT_07s0141g00610.t01	Wine grape	nucleus	48.41	49.53
Solyc09g065990.2.1	Tomato	nucleus	46.36	47.44
PGSC0003DMT400038984	Potato	nucleus	46.36	47.44
KRG92687	Soybean	nucleus	45.23	45.96
VIT_14s0081g00070.t01	Wine grape	nucleus	46.82	45.88
Solyc06g084040.2.1	Tomato	nucleus	44.77	45.71
KRH34095	Soybean	nucleus	44.55	45.37
AT2G30580.1	Thale cress	nucleus	42.95	45.0
CDY47131	Canola	nucleus	42.5	44.84
Solyc06g008600.2.1	Tomato	nucleus	42.5	44.74
CDY10748	Canola	nucleus	42.5	44.42
KRG95629	Soybean	nucleus	43.18	44.39
CDX97807	Canola	nucleus	40.91	43.27
CDY29659	Canola	nucleus	41.36	43.23
KRH67309	Soybean	nucleus	43.41	42.92
PGSC0003DMT400051660	Potato	nucleus	44.09	42.92
Bra018304.1-P	Field mustard	nucleus	42.05	42.82
AT1G06770.1	Thale cress	nucleus	40.45	42.28
KRH32110	Soybean	nucleus	39.77	40.79
KRH71326	Soybean	mitochondrion, nucleus	39.09	39.91
HORVU5Hr1G093720.3	Barley	nucleus	46.82	39.54
CDY23989	Canola	nucleus	38.41	39.39
TraesCS5A01G378600.1	Wheat	nucleus	45.45	39.37
Os03t0632800-01	Rice	nucleus	38.64	39.35
TraesCS5B01G382100.1	Wheat	nucleus	45.68	38.95
TraesCS5D01G388500.1	Wheat	nucleus	45.91	38.85
Os12t0600200-03	Rice	cytosol, nucleus	30.23	38.66
Bra021651.1-P	Field mustard	nucleus	30.91	38.64
VIT_05s0020g04730.t01	Wine grape	nucleus	41.59	38.61
Zm00001d030985_P001	Maize	nucleus	41.14	38.03
KXG37982	Sorghum	nucleus	43.64	37.21
TraesCS5D01G069800.1	Wheat	nucleus	39.77	37.08
Zm00001d041405_P001	Maize	nucleus	40.91	37.04
Zm00001d033322_P001	Maize	nucleus	44.09	36.88
TraesCS5A01G058000.1	Wheat	nucleus	39.55	36.86
PGSC0003DMT400013629	Potato	nucleus	24.55	36.86
HORVU5Hr1G014430.6	Barley	nucleus	39.09	36.29
TraesCS5B01G065600.1	Wheat	cytosol	38.64	36.02
CDY06664	Canola	nucleus	30.68	35.25
Bra015526.1-P	Field mustard	nucleus	19.55	35.1
OQU79520	Sorghum	nucleus	40.45	32.25
Bra015525.1-P	Field mustard	cytosol	30.0	31.5
KRG92425	Soybean	nucleus	29.32	30.28
CDY61240	Canola	nucleus	12.27	30.0
KRH34379	Soybean	nucleus	27.95	28.21
PGSC0003DMT400087291	Potato	nucleus	18.86	26.69
Bra001901.1-P	Field mustard	nucleus	27.05	25.7
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	8.64	25.33
CDX92974	Canola	cytosol	26.36	25.05
CDX94870	Canola	nucleus	25.45	24.94
Solyc09g083300.1.1	Tomato	nucleus, plastid	13.86	22.85
PGSC0003DMT400010761	Potato	nucleus	25.23	22.47
Solyc09g083310.1.1	Tomato	nucleus	20.23	22.25
AT3G23060.1	Thale cress	nucleus	23.86	21.88
PGSC0003DMT400087288	Potato	plastid	8.18	21.69
PGSC0003DMT400015657	Potato	nucleus, plastid	18.86	21.01

Protein Annotations

EnsemblPlants:GSMUA_Achr5P03230_001	EnsemblPlants:GSMUA_Achr5T03230_001	EnsemblPlantsGene:GSMUA_Achr5G03230_001	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42	PFAM:PF13923
PFscan:PS50089	ScanProsite:PS00518	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002967B9F
UniProt:M0SVA2	MapMan:12.3.5.1.1.1	:	:	:	:

Description

Putative E3 ubiquitin protein ligase DRIP2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G03230_001]

Coordinates

chr5:-:2216271..2223402

Molecular Weight (calculated)

48477.3 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.481

Length

440 amino acids

Sequence
(BLAST)

001: MTTSGTGAEA ATAAGLGQVV KVKRKLLVAC MTCPICHKLL RDATTISECL HTFCRKCIYD KLNEEEADFC PVCGIHLGCL PVEKLRADHN LQDLRAKIFP
101: FKKAKAGAPD PSPFITLPVR RKEISLSSLV VNTPRIAAQT GLTGRRRKTV GTRAATSHGR SPATSESNIN EDNDIDKLAK KSSSNGNPSR LSLSRRQASL
201: GADISSNTAK KDVENGGKPL QDKAELWKPL NCLVEAANRT KSCRSSMQNL VSKAEQRHVP DNEVNINKTR VEEHPHKSEV KDENNDSDQL LPVTVKAKRL
301: QGVSKKRRNL KNSVQILPHA ANAQSDRRMI TPLWFSLVAT FDQTGDSSLP QISTSYLRIK DGNVPVSYIQ KYLVTKLNLV SEAEVEITCH GEPVKPTLSL
401: HNLVEQWVRR GSSQKLQAVI GTSAKEFVVV LGYRRRRVPA

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.