Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G23060.1 | CDY26370 | AT5G45490.1 | 21798944 |
| AT3G23060.1 | CDY65474 | AT5G45490.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92974 | Canola | cytosol | 67.93 | 65.87 |
| GSMUA_Achr9P10710_001 | Banana | nucleus | 26.28 | 29.65 |
| AT3G23060.1 | Thale cress | nucleus | 29.62 | 27.71 |
| Os03t0741700-00 | Rice | cytosol | 11.8 | 27.6 |
| CDY47131 | Canola | nucleus | 24.94 | 26.86 |
| CDY10748 | Canola | nucleus | 25.17 | 26.84 |
| CDY29659 | Canola | nucleus | 24.94 | 26.6 |
| CDX97807 | Canola | nucleus | 24.28 | 26.2 |
| GSMUA_Achr5P03230_001 | Banana | nucleus | 24.94 | 25.45 |
| GSMUA_Achr4P17750_001 | Banana | nucleus | 20.71 | 23.91 |
| CDY23989 | Canola | nucleus | 22.27 | 23.31 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 18.71 | 22.4 |
| HORVU5Hr1G014430.6 | Barley | nucleus | 23.39 | 22.15 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 18.49 | 22.13 |
| TraesCS5D01G069800.1 | Wheat | nucleus | 23.16 | 22.03 |
| CDY06664 | Canola | nucleus | 18.49 | 21.67 |
| CDY61240 | Canola | nucleus | 8.69 | 21.67 |
| TraesCS5B01G065600.1 | Wheat | cytosol | 22.72 | 21.61 |
| TraesCS5A01G058000.1 | Wheat | nucleus | 22.72 | 21.61 |
| Zm00001d041405_P001 | Maize | nucleus | 23.39 | 21.6 |
| Zm00001d030985_P001 | Maize | nucleus | 22.72 | 21.43 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 18.93 | 21.25 |
| TraesCS5A01G378600.1 | Wheat | nucleus | 23.16 | 20.47 |
| HORVU5Hr1G093720.3 | Barley | nucleus | 23.61 | 20.35 |
| KXG37982 | Sorghum | nucleus | 23.16 | 20.16 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 15.37 | 20.06 |
| Zm00001d033322_P001 | Maize | nucleus | 23.39 | 19.96 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 21.6 | 19.88 |
| TraesCS5B01G382100.1 | Wheat | nucleus | 22.72 | 19.77 |
| TraesCS5D01G388500.1 | Wheat | nucleus | 22.72 | 19.62 |
| HORVU5Hr1G094160.2 | Barley | plastid | 19.15 | 19.41 |
| Zm00001d013303_P001 | Maize | nucleus | 16.7 | 19.28 |
| OQU79520 | Sorghum | nucleus | 23.16 | 18.84 |
| Zm00001d033967_P001 | Maize | nucleus | 14.7 | 17.28 |
| Os03t0632800-01 | Rice | nucleus | 16.26 | 16.9 |
Protein Annotations
| EnsemblPlants:CDX94870 | EnsemblPlantsGene:GSBRNA2T00158408001 | Gene3D:3.30.40.10 | GO:A0A078DZU8 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR10825 | PANTHER:PTHR10825:SF42 | PFAM:PF13923 |
| PFscan:PS50089 | ProteinID:CDX94870 | ProteinID:CDX94870.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI0004EEFAB1 | MapMan:12.3.5.1.1.1 | : | : | : |
Description
BnaC03g43180D
Coordinates
chrLK031885:-:1038032..1040220
Molecular Weight (calculated)
49224.4 Da
IEP (calculated)
8.798
GRAVY (calculated)
-0.634
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMEKKMTVL KAKRQDMKAC FSCPICNNLY DRATTISECL HTFCKRCIEE KLVVENLKAC PVCNVDLGVA PLDKLRSDNM WDELRLKVFK QKPKSVKAAA
101: AIETASASLT YSRKKKTATS PRASTSPEPA PLESEKLEEE MEAVSLNQSS SALVSNFRRR VRKNLAPKRN ENPLEPEQLH VESENGFEIV LNIEQDNDLA
201: GALTSNGCIQ KVPASSDDLG KSLSNGKESN GTALNVETVI TTNGKEDQGH GSSSGGNTEE VPVQANINNV LLSSGEKQKN NGQEKQENGS TGKISGKKGK
301: GKASSPRVLR PRKQGNMSSD GASEAAISKE AEKKAEGSNK KVWLSLIAAA NQKTERPLLP QISNPYIRTD GNLPVSYVKK YLAYKLGLQS EDQVEIWLRQ
401: EPVCSTQKLH NLVDWWVQST PVSERKSAMV GNSGAEFVMV LHYSGSHFE
101: AIETASASLT YSRKKKTATS PRASTSPEPA PLESEKLEEE MEAVSLNQSS SALVSNFRRR VRKNLAPKRN ENPLEPEQLH VESENGFEIV LNIEQDNDLA
201: GALTSNGCIQ KVPASSDDLG KSLSNGKESN GTALNVETVI TTNGKEDQGH GSSSGGNTEE VPVQANINNV LLSSGEKQKN NGQEKQENGS TGKISGKKGK
301: GKASSPRVLR PRKQGNMSSD GASEAAISKE AEKKAEGSNK KVWLSLIAAA NQKTERPLLP QISNPYIRTD GNLPVSYVKK YLAYKLGLQS EDQVEIWLRQ
401: EPVCSTQKLH NLVDWWVQST PVSERKSAMV GNSGAEFVMV LHYSGSHFE
001: MLTKVLSKEV KPCLACPICT NPFKDATTIS ECLHTFCRSC IRNKFINERV NACPVCNVNL GVFPLEKLRS DCTWQDLKLK IYRAMMESLK KAGPKTVAAS
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
101: VKSSKKKRKS RTSLRVSSSR VSSSPDTPLE PANVVVEPPN VVVEEKHRET VLALQSTRKP IITFQKRGRK ASLPKKIDSK PEPELPPKEP KIKNLFDLNN
201: EPEDNGLDEA EGSTFQEVVP KEKDLCKPIF SLSVTLNIND TPPDIVEPEI SSDDDTEESV EPIQNKCVVN RETKEVPVQV NQNSLLISSD RDREDNSGQK
301: LKTNGAATSR SRKKKGKKPV EKSYSLRPRI GRRTVNPAAG TTTPEAPVSV EEEMKVEEGR NNNPVWFSLK PSKTQNIEML LPPITACCIR VKDSNMTVSY
401: LKKYLMVKLG LESEDQVEIW LRDEPVCSSL TLHNLVDWWV QTTPLPERQS AMVGSSAAEF IMDLYYSFKS DASDSGSASE
Arabidopsis Description
Probable E3 ubiquitin protein ligase DRIPH [Source:UniProtKB/Swiss-Prot;Acc:Q9LS86]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.