Factsheet for Zm00001d033967_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000402_P001
Zm00001d003996_P001
Zm00001d005653_P001
Zm00001d006417_P002
Zm00001d010048_P004
Zm00001d016683_P001
Zm00001d020233_P001
Zm00001d021532_P001
Zm00001d025208_P002
Zm00001d025338_P001
Zm00001d032283_P004
Zm00001d043199_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06770.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT2G30580.1	Zm00001d006417_P002	AT1G30860.1	21798944
AT2G30580.1	Zm00001d021532_P001	AT1G30860.1	21798944
AT2G30580.1	Zm00001d005653_P001	AT2G46550.1	21798944
AT2G30580.1	Zm00001d020233_P001	AT2G46550.1	21798944
AT2G30580.1	Zm00001d032283_P004	AT2G46550.1	21798944
AT2G30580.1	Zm00001d016683_P001	AT3G09980.1	21798944
AT2G30580.1	Zm00001d025338_P001	AT3G09980.1	21798944
AT2G30580.1	Zm00001d010048_P004	AT5G05410.1	18552202
AT2G30580.1	Zm00001d000402_P001	AT5G22310.1	21798944
AT2G30580.1	Zm00001d003996_P001	AT5G22310.1	21798944
AT2G30580.1	Zm00001d025208_P002	AT5G22310.1	21798944
AT3G23060.1	Zm00001d043199_P001	AT5G45490.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0741700-00	Rice	cytosol	29.32	58.33
Zm00001d013303_P001	Maize	nucleus	43.19	42.42
KRG95629	Soybean	nucleus	31.15	27.8
Solyc09g065990.2.1	Tomato	nucleus	31.15	27.67
AT2G30580.1	Thale cress	nucleus	30.37	27.62
VIT_07s0141g00610.t01	Wine grape	nucleus	30.63	27.21
PGSC0003DMT400038984	Potato	nucleus	30.63	27.21
CDX97807	Canola	nucleus	29.06	26.68
CDY47131	Canola	nucleus	29.06	26.62
KRH67309	Soybean	nucleus	30.89	26.52
VIT_14s0081g00070.t01	Wine grape	nucleus	31.15	26.5
CDY10748	Canola	nucleus	29.06	26.37
CDY29659	Canola	nucleus	28.8	26.13
Solyc06g084040.2.1	Tomato	nucleus	29.32	25.99
KRH34095	Soybean	nucleus	29.32	25.93
Bra015526.1-P	Field mustard	nucleus	16.49	25.71
KRG92687	Soybean	nucleus	29.06	25.64
KRH71326	Soybean	mitochondrion, nucleus	28.53	25.29
KRH32110	Soybean	nucleus	28.27	25.17
Bra018304.1-P	Field mustard	nucleus	28.27	25.0
Solyc06g008600.2.1	Tomato	nucleus	27.23	24.88
PGSC0003DMT400051660	Potato	nucleus	28.8	24.34
AT1G06770.1	Thale cress	nucleus	26.44	23.99
CDY23989	Canola	nucleus	26.44	23.54
Zm00001d034468_P001	Maize	nucleus	23.82	23.51
Zm00001d030985_P001	Maize	nucleus	28.8	23.11
Zm00001d041405_P001	Maize	nucleus	28.8	22.63
Zm00001d033322_P001	Maize	nucleus	30.37	22.05
VIT_05s0020g04730.t01	Wine grape	nucleus	26.7	21.52
Bra021651.1-P	Field mustard	nucleus	17.8	19.32
CDY06664	Canola	nucleus	18.85	18.8
Bra015525.1-P	Field mustard	cytosol	19.9	18.14
KRG92425	Soybean	nucleus	18.06	16.2
Zm00001d018972_P005	Maize	nucleus, plastid	20.94	15.78
CDY61240	Canola	nucleus	7.33	15.56
KRH34379	Soybean	nucleus	17.28	15.14
CDX94870	Canola	nucleus	17.28	14.7
Bra001901.1-P	Field mustard	nucleus	17.28	14.25
CDX92974	Canola	cytosol	17.28	14.25
PGSC0003DMT400013629	Potato	nucleus	10.21	13.31
AT3G23060.1	Thale cress	nucleus	16.23	12.92
PGSC0003DMT400087291	Potato	nucleus	10.47	12.86
PGSC0003DMT400010761	Potato	nucleus	16.49	12.75
Bra022807.1-P	Field mustard	cytosol	2.09	11.43
Solyc09g083300.1.1	Tomato	nucleus, plastid	6.54	9.36
PGSC0003DMT400087288	Potato	plastid	3.93	9.04
Zm00001d031900_P001	Maize	cytosol	6.81	8.87
Solyc01g020110.1.1	Tomato	endoplasmic reticulum	3.14	8.0
PGSC0003DMT400015657	Potato	nucleus, plastid	7.59	7.34
Solyc09g083310.1.1	Tomato	nucleus	7.33	7.0

Protein Annotations

MapMan:12.3.5.1.1.1	Gene3D:3.30.40.10	UniProt:A0A1D6L3N1	GO:GO:0003674	GO:GO:0003824	GO:GO:0016874
InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM09051.1	PFAM:PF13923	ScanProsite:PS00518	PFscan:PS50089
PANTHER:PTHR10825	PANTHER:PTHR10825:SF70	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0008454476	EnsemblPlantsGene:Zm00001d033967
EnsemblPlants:Zm00001d033967_P001	EnsemblPlants:Zm00001d033967_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg

Description

E3 ubiquitin protein ligase DRIP2

Coordinates

chr1:-:279841861..279845629

Molecular Weight (calculated)

41739.7 Da

IEP (calculated)

10.425

GRAVY (calculated)

-0.805

Length

382 amino acids

Sequence
(BLAST)

001: MGAARGLARV RREALAACMT CPLCRGLLRE ATAITVCLHT FCRECILEKI NDEEIDCCPV CNIDLGCDPE EKLRPDHNLQ DIRNKVFPIK KINVDSPKAL
101: TTLPAKRKQR SISSLVVDTP SVVKQTGLTG KRTKAKRRAA ASLATSPVNN GTMKLPSKSE NGDQKTDKSC PSQSTKAATS ANKTENQDQK KTKKISAKQS
201: TRAATPAKKK QVNVKNHLTF VTSQFDVKVL YGFSCKNGLF SHHYAAKQRN TDAQVSSKPS SEKRKNSKTA DKDGLRKSSK VPRSTPKIHA VNEEQIKEKE
301: GEPPTRKGEA DNKVVIPGTS VREHSNNSNL KEKNDGTSPE PSPLKDKTAT EDSYRGSLGS AKGLHGPVTT PVWFSLISLP NQ

Best Arabidopsis Sequence Match ( AT2G30580.3 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIR

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.