CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90296
KRG96151
KRG97204
KRH06447
KRH12155
KRH15737
KRH25284
KRH30384
KRH33541
KRH37161
KRH47890
KRH53733
KRH64202
KRH67862
KRH68927

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30580.1	KRH12155	AT1G30860.1	21798944
AT2G30580.1	KRH37161	AT1G30860.1	21798944
AT2G30580.1	KRH53733	AT2G40620.1	21798944
AT2G30580.1	KRH64202	AT2G40620.1	21798944
AT2G30580.1	KRG97204	AT2G46550.1	21798944
AT2G30580.1	KRH06447	AT2G46550.1	21798944
AT2G30580.1	KRH47890	AT2G46550.1	21798944
AT2G30580.1	KRH68927	AT2G46550.1	21798944
AT2G30580.1	KRG96151	AT3G09980.1	21798944
AT2G30580.1	KRH67862	AT3G09980.1	21798944
AT2G30580.1	KRG90296	AT4G13540.1	21798944
AT2G30580.1	KRH15737	AT4G13540.1	21798944
AT2G30580.1	KRH33541	AT4G13540.1	21798944
AT2G30580.1	KRH25284	AT5G22310.1	21798944
AT2G30580.1	KRH30384	AT5G22310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67309	Soybean	nucleus	94.16	90.56
VIT_07s0141g00610.t01	Wine grape	nucleus	67.76	67.44
KRH32110	Soybean	nucleus	63.32	63.17
PGSC0003DMT400038984	Potato	nucleus	62.85	62.56
Solyc09g065990.2.1	Tomato	nucleus	62.15	61.86
KRH71326	Soybean	mitochondrion, nucleus	62.15	61.72
Bra022807.1-P	Field mustard	cytosol	9.81	60.0
Solyc06g084040.2.1	Tomato	nucleus	58.88	58.47
Solyc06g008600.2.1	Tomato	nucleus	56.31	57.66
PGSC0003DMT400051660	Potato	nucleus	59.35	56.19
CDY47131	Canola	nucleus	53.97	55.4
AT2G30580.1	Thale cress	nucleus	53.97	55.0
CDY10748	Canola	nucleus	53.04	53.92
AT1G06770.1	Thale cress	nucleus	51.64	52.49
Bra018304.1-P	Field mustard	nucleus	52.57	52.08
PGSC0003DMT400013629	Potato	nucleus	35.28	51.54
CDX97807	Canola	nucleus	49.77	51.2
KRG92687	Soybean	nucleus	51.64	51.04
KRH34095	Soybean	nucleus	51.17	50.69
CDY29659	Canola	nucleus	49.3	50.12
GSMUA_Achr9P10710_001	Banana	nucleus	46.5	50.0
Bra021651.1-P	Field mustard	nucleus	39.49	48.01
Os03t0741700-00	Rice	cytosol	21.5	47.92
CDY23989	Canola	nucleus	47.9	47.79
GSMUA_Achr4P17750_001	Banana	nucleus	39.49	43.44
GSMUA_Achr5P03230_001	Banana	nucleus	44.39	43.18
Os12t0600200-03	Rice	cytosol, nucleus	32.48	40.41
Bra015526.1-P	Field mustard	nucleus	21.96	38.37
KXG37982	Sorghum	nucleus	46.03	38.18
TraesCS5A01G378600.1	Wheat	nucleus	45.09	37.99
CDY06664	Canola	nucleus	33.88	37.86
TraesCS5D01G388500.1	Wheat	nucleus	44.86	36.92
Zm00001d033322_P001	Maize	nucleus	45.33	36.88
HORVU5Hr1G093720.3	Barley	nucleus	44.86	36.85
TraesCS5B01G382100.1	Wheat	nucleus	44.39	36.82
TraesCS5D01G069800.1	Wheat	nucleus	40.42	36.65
TraesCS5D01G391100.1	Wheat	mitochondrion	32.01	36.53
TraesCS5A01G381800.1	Wheat	mitochondrion	32.01	36.53
TraesCS5A01G058000.1	Wheat	nucleus	40.19	36.44
Zm00001d030985_P001	Maize	nucleus	40.19	36.13
TraesCS5B01G065600.1	Wheat	cytosol	39.72	36.02
HORVU5Hr1G014430.6	Barley	nucleus	39.72	35.87
Zm00001d041405_P001	Maize	nucleus	40.65	35.8
Os03t0632800-01	Rice	nucleus	34.58	34.26
TraesCS5B01G385300.1	Wheat	mitochondrion	32.01	34.25
Zm00001d013303_P001	Maize	nucleus	30.37	33.42
Bra015525.1-P	Field mustard	cytosol	32.24	32.94
HORVU5Hr1G094160.2	Barley	plastid	33.64	32.51
KRG92425	Soybean	nucleus	32.24	32.39
KRH34379	Soybean	nucleus	32.71	32.11
KXG37592	Sorghum	mitochondrion, nucleus	35.98	31.56
OQU79520	Sorghum	nucleus	40.65	31.52
Zm00001d033967_P001	Maize	nucleus	27.8	31.15

Protein Annotations

EMBL:ACUP02012122	EnsemblPlants:KRG95629	EnsemblPlantsGene:GLYMA_19G161700	EntrezGene:100793731	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	PANTHER:PTHR10825	PANTHER:PTHR10825:SF42
PFAM:PF13923	PFscan:PS50089	ProteinID:KRG95629	ProteinID:KRG95629.1	ScanProsite:PS00518	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233F2C1	UniProt:I1N9N3	MapMan:12.3.5.1.1.1	:

Description

hypothetical protein

Coordinates

chr19:+:42237915..42243998

Molecular Weight (calculated)

47432.9 Da

IEP (calculated)

9.386

GRAVY (calculated)

-0.531

Length

428 amino acids

Sequence
(BLAST)

001: MSNQVVKVRR DTIAACMTCP LCGKLFREAT TISECLHTFC RKCIYDKITD EEIECCPICN IDLGCVPLEK LRPDHSLQDV RAKVFPLKGR KVKAPEVVTS
101: VPLPARRKER SLSSLVVSTP RVSTQATMTG RRTKPTRKAS GLRSTSFSIE KPIKKEEYLL EDRPDSSSSP DTSHKFAHNS GQSMSPCEGS QSIPNKGSEN
201: GAEPWDAKLD LWKPLNCLVE VASRSKSFKS NILGSDAKLE TNQVNESDSQ VLKIKNKENK RKAKIEDEKS SPYPVSSDTA KPNKLRRIRK KKEPASGESG
301: ISPQAVLDSA SNRLSRTGPI WFSLVASENQ EGDDPLPQIP ASYLRIKDGS VPVSFIQKYL MKKLDLTSET EVEIKCVGQP VLPTLQLYNL VELWLDTAPT
401: SQRIPATIGS SAKDFVMVLA YARRVPDP

Best Arabidopsis Sequence Match ( AT2G30580.2 )
(BLAST)

001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIRDGN IPVSFIQKYL MRKLDLKSED EVEITCMGEP VIPTLQLHSL VDLWLETTSK HQRVAASIGS
401: SAKEFVMVLV YSRKLPECNN

Arabidopsis Description

DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.