Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033967_P001 | Maize | nucleus | 58.33 | 29.32 |
| TraesCS5D01G391100.1 | Wheat | mitochondrion | 47.92 | 24.53 |
| TraesCS5A01G381800.1 | Wheat | mitochondrion | 47.4 | 24.27 |
| KXG37592 | Sorghum | mitochondrion, nucleus | 60.94 | 23.98 |
| TraesCS5B01G385300.1 | Wheat | mitochondrion | 48.96 | 23.5 |
| VIT_14s0081g00070.t01 | Wine grape | nucleus | 51.56 | 22.05 |
| VIT_07s0141g00610.t01 | Wine grape | nucleus | 48.44 | 21.63 |
| KRG95629 | Soybean | nucleus | 47.92 | 21.5 |
| HORVU5Hr1G094160.2 | Barley | plastid | 49.48 | 21.44 |
| Solyc09g065990.2.1 | Tomato | nucleus | 47.4 | 21.16 |
| PGSC0003DMT400038984 | Potato | nucleus | 46.88 | 20.93 |
| KRH67309 | Soybean | nucleus | 47.92 | 20.67 |
| AT2G30580.1 | Thale cress | nucleus | 44.79 | 20.48 |
| Solyc06g084040.2.1 | Tomato | nucleus | 45.83 | 20.42 |
| KRH71326 | Soybean | mitochondrion, nucleus | 45.83 | 20.42 |
| CDY29659 | Canola | nucleus | 44.27 | 20.19 |
| Solyc06g008600.2.1 | Tomato | nucleus | 43.75 | 20.1 |
| KRG92687 | Soybean | nucleus | 45.31 | 20.09 |
| KRH32110 | Soybean | nucleus | 44.79 | 20.05 |
| Bra015526.1-P | Field mustard | nucleus | 25.52 | 20.0 |
| KRH34095 | Soybean | nucleus | 44.79 | 19.91 |
| Os03t0798200-01 | Rice | nucleus | 39.58 | 19.74 |
| CDY10748 | Canola | nucleus | 43.23 | 19.71 |
| CDX97807 | Canola | nucleus | 42.71 | 19.71 |
| PGSC0003DMT400051660 | Potato | nucleus | 46.35 | 19.69 |
| CDY47131 | Canola | nucleus | 42.71 | 19.66 |
| Os03t0632800-01 | Rice | nucleus | 43.23 | 19.21 |
| Bra018304.1-P | Field mustard | nucleus | 42.71 | 18.98 |
| AT1G06770.1 | Thale cress | nucleus | 40.1 | 18.29 |
| VIT_05s0020g04730.t01 | Wine grape | nucleus | 44.27 | 17.93 |
| CDY23989 | Canola | nucleus | 37.5 | 16.78 |
| CDY06664 | Canola | nucleus | 31.25 | 15.67 |
| KRG92425 | Soybean | nucleus | 32.29 | 14.55 |
| KRH34379 | Soybean | nucleus | 32.81 | 14.45 |
| Bra015525.1-P | Field mustard | cytosol | 31.25 | 14.32 |
| Bra021651.1-P | Field mustard | nucleus | 22.4 | 12.22 |
| Os12t0600200-03 | Rice | cytosol, nucleus | 21.35 | 11.92 |
| CDX94870 | Canola | nucleus | 27.6 | 11.8 |
| CDY61240 | Canola | nucleus | 10.94 | 11.67 |
| Bra001901.1-P | Field mustard | nucleus | 26.56 | 11.02 |
| CDX92974 | Canola | cytosol | 26.04 | 10.8 |
| PGSC0003DMT400010761 | Potato | nucleus | 25.52 | 9.92 |
| AT3G23060.1 | Thale cress | nucleus | 23.44 | 9.38 |
| PGSC0003DMT400087291 | Potato | nucleus | 13.54 | 8.36 |
| Solyc09g083300.1.1 | Tomato | nucleus, plastid | 11.46 | 8.24 |
| Solyc01g020110.1.1 | Tomato | endoplasmic reticulum | 5.73 | 7.33 |
| Bra022807.1-P | Field mustard | cytosol | 2.6 | 7.14 |
| PGSC0003DMT400087288 | Potato | plastid | 4.69 | 5.42 |
| Solyc09g083310.1.1 | Tomato | nucleus | 9.38 | 4.5 |
| PGSC0003DMT400013629 | Potato | nucleus | 6.25 | 4.1 |
| PGSC0003DMT400015657 | Potato | nucleus, plastid | 7.81 | 3.8 |
Protein Annotations
| MapMan:12.3.5.1.1.1 | Gene3D:3.30.40.10 | UniProt:A0A0N7KI10 | ProteinID:BAS86313.1 | InterPro:IPR001841 | InterPro:IPR013083 |
| EnsemblPlantsGene:Os03g0741700 | EnsemblPlants:Os03t0741700-00 | PFAM:PF13923 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR10825 |
| PANTHER:PTHR10825:SF42 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000393997F | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
Hypothetical conserved gene. (Os03t0741700-00)
Coordinates
chr3:-:30440393..30445261
Molecular Weight (calculated)
21038.8 Da
IEP (calculated)
10.550
GRAVY (calculated)
-0.515
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAARGGVRR VRREALVACM TCPLCKGLLR EATAITECLH TFCKECIMEK IDDEEVDHCP VCNIDLGCDP EEKLRPDHNV QDIRNKVFPL KVKKVGAPKA
101: PTVTLPVKRK QRSLSSLVVD TPRVAVQTGL TGRRTKTARR TAVSHVNSPG NNGTIKLANK SEGRDHKTQK ISAAQSAKMT KTGNKKKVIS KC
101: PTVTLPVKRK QRSLSSLVVD TPRVAVQTGL TGRRTKTARR TAVSHVNSPG NNGTIKLANK SEGRDHKTQK ISAAQSAKMT KTGNKKKVIS KC
001: MEGDMVAKVK RETVVACMTC PLCDKLLRDA TTISECLHTF CRKCIYEKIT EDEIESCPVC DIDLGGTPLE KLRPDHILQD LRAKLFPLKR KKERAPEVVS
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIR
101: SISLPAKRKE RSISSLVVST PRVSAQAGTT GKRTKAATRK DVRGSGSFTK RTVKKEEEFG DDHVESASSP ETLKKFTQNK RQSSYANPNQ SLSNRRNKDV
201: DEPWDSKLHL WKPLNFLVDV ANGTKDPKSE LGNASHNDVQ GSKTKTKDHK RKCKLEEEIS NNGDPTTSET ATLKRTRRTR RKRSSTFGDS RIPLLPGAAS
301: LKQERRNGHV WFSLVASSNQ EGEASLPQIP ANYLRIR
Arabidopsis Description
DRIP2DRIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178VRI3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.