Factsheet for Os01t0798900-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	Os04t0654700-02	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G358800.1	Wheat	extracellular	66.25	67.26
TraesCS3D01G322300.1	Wheat	cytosol	66.25	67.26
EES01602	Sorghum	cytosol	67.0	64.56
Zm00001d043199_P001	Maize	cytosol	63.22	61.07
GSMUA_Achr1P08716_001	Banana	cytosol	44.58	43.92
GSMUA_Achr1P08690_001	Banana	mitochondrion	18.89	41.9
CDX78918	Canola	cytosol	15.11	25.1
Bra013373.1-P	Field mustard	nucleus	14.86	24.79
AT5G45440.1	Thale cress	cytosol	21.16	24.28
AT5G45490.1	Thale cress	cytosol	21.16	23.73
CDY70054	Canola	nucleus	22.42	23.3
CDY65474	Canola	cytosol	21.41	22.73
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.41	22.61
AT4G19060.1	Thale cress	cytosol	21.66	22.45
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	13.6	22.13
Os07t0105900-01	Rice	cytosol	23.68	20.48

Protein Annotations

EnsemblPlants:Os01t0798900-00	EnsemblPlantsGene:Os01g0798900	EntrezGene:107275438	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931
PRINTS:PR00364	ProteinID:BAB92410.1	ProteinID:BAS74779.1	ProteinID:EAZ13834.1	RefSeq:XP_015639495.1	SEG:seg
SUPFAM:SSF52540	UniParc:UPI000009D2B9	UniProt:Q8LJ96	MapMan:35.1	:	:

Description

Similar to disease resistance protein RGA4. (Os01t0798900-00)

Coordinates

chr1:+:33815405..33816598

Molecular Weight (calculated)

43352.5 Da

IEP (calculated)

5.030

GRAVY (calculated)

-0.159

Length

397 amino acids

Sequence
(BLAST)

001: MAVEVVQFLV RKYVDSLAEE EAAAELPFRA HFYDVKAELE KAAISSTNAD ELRQCLYELN DLLAECRMLA SRTNTRPGCF SPSEAWRSNR VKTRVIAVKR
101: RVLRCVESDS SGNAAALEEE DSAAAGFSRW TTSWLEEGTV HGFDQQLAEL ESMAFGAECG AGGLTGVGIV GMGGVGKTAL AQLVFNSPRA RRRFFPRIWV
201: CLSRTACAGV DVRKEVLQSM LMALGLEEEV ILSMDGGNGL GEMVFAVHEQ LKGKRYLVVF DDVWNVDGWY ADVVGRRNAS PTGEEWGERL AFGLPKERGG
301: VVVVTSRLEQ AAETMVGKSS LHRVQPLADG ESCWAIFMDA FSKERRPADV TTVNNMKDEI IDTCGGLPSA AKTLGDIFAR SLSSPASTSS QELSKNR

Best Arabidopsis Sequence Match ( AT5G45440.1 )
(BLAST)

001: MTQEDSSRGL TSVGRVDFTN RFADRYNEWL GTTGDETKQV EDRVETDSGL PGHDIYGFEN EIKSLQHFLL DQKSYKLFKS LVVVGEYGVG KTALCQQIFN
101: DYDVRNAYAP RIWVSMHSNE SKEGLDGKIC VLKTILKGLG VEESMFESIH REVVEEVSNR QEAGEIDGET AKEKEISALL YALHLNLRWK KYLIVFDDVQ
201: EIDNWDEKLD AKLNEGEKWG KYLSDGFPKG SGGRVIYTTR DENLAKNLVV QKHEIHRLWP LSDSNSVWKI YEAMIQKREK ESPRNDKKCI DELMNKSRGL
301: PLAARLLAEL DPMLFDDGKA NQNGSKDGKT DSVDNPNSEE SKTKPL

Arabidopsis Description

Probable disease resistance protein At5g45440 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.