Factsheet for TraesCS3B01G358800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G45440.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G322300.1	Wheat	cytosol	93.35	93.35
Os01t0798900-00	Rice	cytosol	67.26	66.25
EES01602	Sorghum	cytosol	61.64	58.5
Zm00001d043199_P001	Maize	cytosol	59.08	56.2
GSMUA_Achr1P08716_001	Banana	cytosol	38.87	37.72
GSMUA_Achr1P08690_001	Banana	mitochondrion	16.37	35.75
CDX78918	Canola	cytosol	15.6	25.52
Bra013373.1-P	Field mustard	nucleus	15.35	25.21
AT5G45440.1	Thale cress	cytosol	20.97	23.7
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	14.58	23.36
AT5G45490.1	Thale cress	cytosol	20.46	22.6
CDY70054	Canola	nucleus	21.99	22.51
AT4G19060.1	Thale cress	cytosol	21.99	22.45
CDY65474	Canola	cytosol	21.23	22.19
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	21.23	22.07
TraesCS2B01G284500.1	Wheat	cytosol	24.3	20.52

Protein Annotations

EnsemblPlants:TraesCS3B01G358800.1	EnsemblPlantsGene:TraesCS3B01G358800	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931	PRINTS:PR00364
SEG:seg	SUPFAM:SSF52540	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3B:+:571300249..571301424

Molecular Weight (calculated)

43475.4 Da

IEP (calculated)

5.850

GRAVY (calculated)

-0.142

Length

391 amino acids

Sequence
(BLAST)

001: MAVVVQFLVR KFVDSLAEEG AAELPFSSHF YDMRAGLEKA AISSTNADEL RECMYELNNL LSQCRMLNNR PIPRSCCFSP SEAWLSNKVK QRVIAMKRRV
101: LQCVHNDDPN GDAAALPEEN ATTAGFSRWS TSWVEQSRIY GFDQQLAELE SRAFRDRSPG RLTGVGIVGM GGIGKTALAQ LVFNSPLARR RFFPRIWVCL
201: SRTSCIGKDV RKEVLQSILM ALGLEEELIL AIDSLGDMEL AVHEQLKGKR YLIVFDDVWN VDDWYADIAG HENALSRGEQ LQNGLVLALP KERGGIVIVT
301: SRQEQAAEMM VGKGSVYRVK PLADRESAWA IFMDALNKER QPIDLAAINN LKEEILQTCG GLPSMAKAMA DIFAKSLTLP ASTSSQELKL E

Best Arabidopsis Sequence Match ( AT5G45440.1 )
(BLAST)

001: MTQEDSSRGL TSVGRVDFTN RFADRYNEWL GTTGDETKQV EDRVETDSGL PGHDIYGFEN EIKSLQHFLL DQKSYKLFKS LVVVGEYGVG KTALCQQIFN
101: DYDVRNAYAP RIWVSMHSNE SKEGLDGKIC VLKTILKGLG VEESMFESIH REVVEEVSNR QEAGEIDGET AKEKEISALL YALHLNLRWK KYLIVFDDVQ
201: EIDNWDEKLD AKLNEGEKWG KYLSDGFPKG SGGRVIYTTR DENLAKNLVV QKHEIHRLWP LSDSNSVWKI YEAMIQKREK ESPRNDKKCI DELMNKSRGL
301: PLAARLLAEL DPMLFDDGKA NQNGSKDGKT DSVDNPNSEE SKTKPL

Arabidopsis Description

Probable disease resistance protein At5g45440 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.