Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 1
- mitochondrion 1
- plasma membrane 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G45440.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT5G45440.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT5G45440.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021980.1-P | Field mustard | cytosol, nucleus, plasma membrane | 96.72 | 62.77 |
| CDY65474 | Canola | cytosol | 84.02 | 54.81 |
| AT5G45490.1 | Thale cress | cytosol | 61.48 | 42.37 |
| AT5G45440.1 | Thale cress | cytosol | 59.84 | 42.2 |
| CDX78918 | Canola | cytosol | 37.7 | 38.49 |
| GSMUA_Achr1P08690_001 | Banana | mitochondrion | 19.67 | 26.82 |
| CDY70054 | Canola | nucleus | 36.48 | 23.3 |
| GSMUA_Achr1P08716_001 | Banana | cytosol | 24.18 | 14.64 |
| TraesCS3B01G358800.1 | Wheat | extracellular | 23.36 | 14.58 |
| TraesCS3D01G322300.1 | Wheat | cytosol | 23.36 | 14.58 |
| Os01t0798900-00 | Rice | cytosol | 22.13 | 13.6 |
| EES01602 | Sorghum | cytosol | 22.13 | 13.11 |
| Zm00001d043199_P001 | Maize | cytosol | 21.31 | 12.65 |
Protein Annotations
| EnsemblPlants:CDY26370 | EnsemblPlantsGene:GSBRNA2T00035129001 | Gene3D:3.40.50.300 | GO:A0A078GIQ0 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0043531 | InterPro:NB-ARC | InterPro:P-loop_NTPase | ncoils:Coil | PANTHER:PTHR43886 |
| PANTHER:PTHR43886:SF7 | PFAM:PF00931 | PRINTS:PR00364 | ProteinID:CDY26370 | ProteinID:CDY26370.1 | SEG:seg |
| SUPFAM:SSF52540 | UniParc:UPI0004EE4045 | UniProt:A0A078GIQ0 | MapMan:35.1 | : | : |
Description
BnaA02g24000DBnaA02g24000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GIQ0]
Coordinates
chrLK032189:-:184998..185979
Molecular Weight (calculated)
27850.6 Da
IEP (calculated)
4.857
GRAVY (calculated)
-0.827
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSTERSEDG LDGKISVLKN ILTVLGVEVS ILVKINKYAV DEYKSNMESE VESKKHDAET AKEKEISALL YALHLNLRWK KYLIVFDDVR EEDNWNEKLQ
101: DDEEKLKKDK RWGKYLSDGF PKGSGGRVIY TTRDENKNLA KKLVAEEHEI HRLWPLTDSL SVWRIYDAAR IENEEDDPPR NDKKCIEELM NKSRGLPLAV
201: RLLATLLPVF LDDESTEQNG STNGTTGSEN TTTEQNGSTQ PPTA
101: DDEEKLKKDK RWGKYLSDGF PKGSGGRVIY TTRDENKNLA KKLVAEEHEI HRLWPLTDSL SVWRIYDAAR IENEEDDPPR NDKKCIEELM NKSRGLPLAV
201: RLLATLLPVF LDDESTEQNG STNGTTGSEN TTTEQNGSTQ PPTA
001: MTQEDSSRGL TSVGRVDFTN RFADRYNEWL GTTGDETKQV EDRVETDSGL PGHDIYGFEN EIKSLQHFLL DQKSYKLFKS LVVVGEYGVG KTALCQQIFN
101: DYDVRNAYAP RIWVSMHSNE SKEGLDGKIC VLKTILKGLG VEESMFESIH REVVEEVSNR QEAGEIDGET AKEKEISALL YALHLNLRWK KYLIVFDDVQ
201: EIDNWDEKLD AKLNEGEKWG KYLSDGFPKG SGGRVIYTTR DENLAKNLVV QKHEIHRLWP LSDSNSVWKI YEAMIQKREK ESPRNDKKCI DELMNKSRGL
301: PLAARLLAEL DPMLFDDGKA NQNGSKDGKT DSVDNPNSEE SKTKPL
101: DYDVRNAYAP RIWVSMHSNE SKEGLDGKIC VLKTILKGLG VEESMFESIH REVVEEVSNR QEAGEIDGET AKEKEISALL YALHLNLRWK KYLIVFDDVQ
201: EIDNWDEKLD AKLNEGEKWG KYLSDGFPKG SGGRVIYTTR DENLAKNLVV QKHEIHRLWP LSDSNSVWKI YEAMIQKREK ESPRNDKKCI DELMNKSRGL
301: PLAARLLAEL DPMLFDDGKA NQNGSKDGKT DSVDNPNSEE SKTKPL
Arabidopsis Description
Probable disease resistance protein At5g45440 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHJ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.