CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04768
CDY21400
CDY25761

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	CDY04768	AT1G22920.1	21798944
AT5G45440.1	CDY21400	AT1G22920.1	21798944
AT5G45440.1	CDY25761	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	54.81	84.02
AT5G45490.1	Thale cress	cytosol	57.22	60.45
AT5G45440.1	Thale cress	cytosol	55.35	59.83
CDX78918	Canola	cytosol	25.4	39.75
CDY70054	Canola	nucleus	38.5	37.7
GSMUA_Achr1P08690_001	Banana	mitochondrion	13.37	27.93
GSMUA_Achr1P08716_001	Banana	cytosol	23.8	22.08
Os01t0798900-00	Rice	cytosol	22.73	21.41
TraesCS3B01G358800.1	Wheat	extracellular	22.19	21.23
TraesCS3D01G322300.1	Wheat	cytosol	21.93	20.97
EES01602	Sorghum	cytosol	21.12	19.17
Zm00001d043199_P001	Maize	cytosol	20.59	18.73

Protein Annotations

EnsemblPlants:CDY65474	EnsemblPlantsGene:GSBRNA2T00046655001	Gene3D:3.40.50.300	GO:A0A078JFJ7	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR43886
PANTHER:PTHR43886:SF7	PFAM:PF00931	ProteinID:CDY65474	ProteinID:CDY65474.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI0004EEAC5E	UniProt:A0A078JFJ7	MapMan:35.1	:	:	:

Description

BnaC02g46990DBnaC02g46990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFJ7]

Coordinates

chrLK034801:-:10984..12332

Molecular Weight (calculated)

42654.3 Da

IEP (calculated)

5.808

GRAVY (calculated)

-0.786

Length

374 amino acids

Sequence
(BLAST)

001: MNPEIPKQGE AFLNLFNQKY EDWANNGNKT DQKDPKSKYL STGTLKKREG GALEPDENDR VESDSKLPGH KIHGFSNEIK SLKNFLLDQK VYNEFKTLVV
101: VGEYGVGKTA LCKTIFNDED VKSVYAPRIW VSMHSTEWSA EDGLDGKISV LKNILTVLGV EVSILDKINK YAVDEYKSNM ESEVESKKLD AETAKEKEIS
201: ALLYALHLNL RWKKYLIVFD DVREEDNWNE KLQDDEEKLK KDKRWGKYLS DGFPKGSGGR VIYTTRDENK NLAKKLVAEE HEIHRLWPLT DSLSVWRIYD
301: AARIYNKVKD PPRNDKKCIE ELMNKSRGLP LAVRLLATLL PVFLDDENTE QTNGTTGSGN TTTEQNGSTQ PQTA

Best Arabidopsis Sequence Match ( AT5G45490.2 )
(BLAST)

001: MPSKNLQQAV LTNEFTTNFI TTCKDWLDVN GLAKGNLEKK RDDNEEEERL KTESKLPGHD IHGFDNEIKS LQHFLLDQKV RREFKSLVIV GEYGVGKTAL
101: CQKIFNDEAV KSVYAPRVWV SMENKESKEG LDGKICVLKK ILKGLGVEEL ILETISTDAK QEFKDNEEVA SNQEAGEIDR ETEKEKELSA LLYALHLNLR
201: WKKYLIVFDD VRENDNWDEK LDAKLKEDEK WGKYLSDGFP KGSGGRVIYT TRDENLAKNL VAQKHEIHRL WPLSDHQSVW KIYDAVVKDK QKESPRNDKK
301: CIDELMNKSR GLPLAARLLA ERDPVFVDDE VGPVGSTHGQ TDSSNRQPAN QASS

Arabidopsis Description

Probable disease resistance protein At5g45490 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHI7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.