CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013373.1-P	Field mustard	nucleus	57.59	92.44
CDX78918	Canola	cytosol	57.59	92.05
AT4G19060.1	Thale cress	cytosol	55.24	55.09
CDY65474	Canola	cytosol	37.7	38.5
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	23.3	36.48
GSMUA_Achr1P08690_001	Banana	mitochondrion	13.61	29.05
GSMUA_Achr1P08716_001	Banana	cytosol	24.08	22.83
Os01t0798900-00	Rice	cytosol	23.3	22.42
TraesCS3B01G358800.1	Wheat	extracellular	22.51	21.99
TraesCS3D01G322300.1	Wheat	cytosol	22.51	21.99
EES01602	Sorghum	cytosol	21.73	20.15
Zm00001d043199_P001	Maize	cytosol	21.2	19.71

Protein Annotations

EnsemblPlants:CDY70054	EnsemblPlantsGene:GSBRNA2T00096021001	Gene3D:3.40.50.300	GO:A0A078JT87	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	ncoils:Coil	PANTHER:PTHR44851
PFAM:PF00931	ProteinID:CDY70054	ProteinID:CDY70054.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EF179C
UniProt:A0A078JT87	MapMan:35.1	:	:	:	:

Description

BnaCnng66530DBnaCnng66530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JT87]

Coordinates

chrLK041029:-:1666..3031

Molecular Weight (calculated)

43130.8 Da

IEP (calculated)

5.150

GRAVY (calculated)

-0.843

Length

382 amino acids

Sequence
(BLAST)

001: MVKDVDDKES PPDIDQRLFL IGSSFGIKYG SWLNEKPSES SSKGKNKSST NGGSSSATPD TSKVRRSKTS RVETRPDLPD KPIRGFVNES LFLKNFLLKG
101: KGSEEFKTLA IVGKFGVGKT TLCQDVFNDK DVKEAYLPRI WVSMYSEETK EGEGDQKVAV LKRILRSLGV EDEALDSIRT EADEEKRKNA EERRRDEERV
201: EEKELFRLLN ALNSNLFGKK YLVVLDDVWE DNEWSQRLDG EETPQEKTHL SCGFPKGSGG RVIVTSRDEG LAKKIVGEDE NVQRLFPRSD VESVWEIYKD
301: AFGEPMKDEN GEVVKDAAGV PMKDAVEKHV IGKDGRPTKW VVNPRYPGRY KKELMDKSGG VPWAAQMLAQ IEPLKNDEDK DM

Best Arabidopsis Sequence Match ( AT4G19060.1 )
(BLAST)

001: MDIAKKFISE IDDKLESKSE FDKELEKIKS SFNEEYEKWS SGKQRGSSSK HGNQSTHGDS SPTRNSSGSS KKGRPKANRV ETSSELPDHL IRGFINEKLF
101: LKNFLLKQKE SEEFKTLAIV GKYGVGKTTL CQAVFNDEDV KQVYFPRIWV SMYSKETKED EDPKIDVVKR ILRSLGVEDE MFKHIKTEAE EEKSIKDEAG
201: EREEETVKEK ELARLLYALH LNLIGKKYLI VLDDVWEDNE WDQRLDDEKK QQEKSHLSCG FPKGFGGKVI MTSRDERLAK AIVGEEENLQ RLFPRSDAES
301: LWEIYIDAVP TKVDDAAATN LGDAVATNAG DAVAPKVNPR YPGRYKQELM DKSCGIPLAA RMLAKIEPVK VDEIGNIDRK QSF

Arabidopsis Description

Probable disease resistance protein At4g19060 [Source:UniProtKB/Swiss-Prot;Acc:Q84WD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.