CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45440.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043199_P001	Maize	cytosol	88.83	89.05
Os01t0798900-00	Rice	cytosol	64.56	67.0
TraesCS3D01G322300.1	Wheat	cytosol	58.74	61.89
TraesCS3B01G358800.1	Wheat	extracellular	58.5	61.64
GSMUA_Achr1P08716_001	Banana	cytosol	40.05	40.94
GSMUA_Achr1P08690_001	Banana	mitochondrion	17.72	40.78
AT5G45440.1	Thale cress	cytosol	20.87	24.86
CDX78918	Canola	cytosol	14.32	24.69
Bra013373.1-P	Field mustard	nucleus	14.08	24.37
AT4G19060.1	Thale cress	cytosol	22.09	23.76
AT5G45490.1	Thale cress	cytosol	20.39	23.73
CDY26370	Canola	endoplasmic reticulum, nucleus, plasma membrane	13.11	22.13
CDY70054	Canola	nucleus	20.15	21.73
Bra021980.1-P	Field mustard	cytosol, nucleus, plasma membrane	19.42	21.28
CDY65474	Canola	cytosol	19.17	21.12
EER97827	Sorghum	cytosol	22.33	15.41

Protein Annotations

EnsemblPlants:EES01602	EnsemblPlantsGene:SORBI_3003G325100	EntrezGene:8082394	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0043531	InterPro:NB-ARC	InterPro:P-loop_NTPase	PANTHER:PTHR23155	PFAM:PF00931
PRINTS:PR00364	ProteinID:EES01602	ProteinID:EES01602.1	RefSeq:XP_002456482.1	SEG:seg	SUPFAM:SSF52540
UniParc:UPI0001A84483	UniProt:C5XMF5	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:65148804..65150042

Molecular Weight (calculated)

45387.9 Da

IEP (calculated)

5.540

GRAVY (calculated)

-0.256

Length

412 amino acids

Sequence
(BLAST)

001: MAVEVVQFLV KKFVDSFTEE AADAEAELPF RAQFHGMRAE LQKAAVSAAN ADELRECLYE LNDLLAECRR LANRPNQQRL RWCFAQSDAW CFPKTKKRVT
101: AVRRRVLECV EHDSGGNAAA SQEEEDAAAG LDRWTTSWLE RSRIHGFDQQ LAELESMAFG ECGAGRLNGV GIVGMGGIGK TALAQLLFSS PRAKGRFFPR
201: IWMCMSRTAS AGADRRKEVL QGMLMALGHE EDAILSIDGS DSLAELVIAV HEQLKGKRYL IVFDDVWHID SWYADVVGRQ NAPRRTDDWS ERLAFALPKE
301: RGGLVVVTSR LEQAAEAMVG KSCLYRVRPL ADSESCWAIF TDALSQSQSQ EKKTVDLATV NNMKQEILET CGGLPSAAKT MGDIFATSSV SPPASTSTSQ
401: ELGKSDHIIT AS

Best Arabidopsis Sequence Match ( AT5G45440.1 )
(BLAST)

001: MTQEDSSRGL TSVGRVDFTN RFADRYNEWL GTTGDETKQV EDRVETDSGL PGHDIYGFEN EIKSLQHFLL DQKSYKLFKS LVVVGEYGVG KTALCQQIFN
101: DYDVRNAYAP RIWVSMHSNE SKEGLDGKIC VLKTILKGLG VEESMFESIH REVVEEVSNR QEAGEIDGET AKEKEISALL YALHLNLRWK KYLIVFDDVQ
201: EIDNWDEKLD AKLNEGEKWG KYLSDGFPKG SGGRVIYTTR DENLAKNLVV QKHEIHRLWP LSDSNSVWKI YEAMIQKREK ESPRNDKKCI DELMNKSRGL
301: PLAARLLAEL DPMLFDDGKA NQNGSKDGKT DSVDNPNSEE SKTKPL

Arabidopsis Description

Probable disease resistance protein At5g45440 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.