Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002027_P002 | Maize | extracellular | 95.44 | 98.34 |
| Os04t0654700-02 | Rice | cytosol | 90.08 | 93.33 |
| TraesCS2D01G505300.1 | Wheat | golgi, unclear | 89.01 | 91.21 |
| TraesCS2A01G504600.1 | Wheat | cytosol | 89.01 | 91.21 |
| HORVU3Hr1G054660.1 | Barley | cytosol | 58.45 | 89.34 |
| HORVU0Hr1G018470.1 | Barley | cytosol | 57.64 | 88.48 |
| HORVU6Hr1G023630.1 | Barley | cytosol | 56.3 | 87.5 |
| HORVU1Hr1G008160.1 | Barley | cytosol | 35.66 | 87.5 |
| HORVU7Hr1G078010.1 | Barley | cytosol | 31.1 | 85.29 |
| HORVU0Hr1G025410.1 | Barley | cytosol | 68.36 | 84.72 |
| HORVU4Hr1G048730.1 | Barley | cytosol | 68.36 | 84.44 |
| HORVU3Hr1G113750.1 | Barley | cytosol | 34.32 | 82.58 |
| GSMUA_Achr10P... | Banana | cytosol | 79.09 | 80.16 |
| Solyc11g017300.1.1 | Tomato | cytosol | 77.75 | 79.02 |
| PGSC0003DMT400023896 | Potato | cytosol | 77.48 | 78.75 |
| KRH61926 | Soybean | nucleus | 78.82 | 78.61 |
| Solyc06g073150.2.1 | Tomato | cytosol | 77.21 | 78.47 |
| PGSC0003DMT400069203 | Potato | cytosol | 77.21 | 78.47 |
| Bra024548.1-P | Field mustard | cytosol | 74.8 | 78.37 |
| AT1G71230.1 | Thale cress | cytosol | 75.07 | 78.21 |
| AT1G22920.1 | Thale cress | cytosol | 73.99 | 77.31 |
| HORVU2Hr1G067660.1 | Barley | cytosol, peroxisome | 14.48 | 77.14 |
| HORVU2Hr1G056160.5 | Barley | cytosol | 34.32 | 76.19 |
| Bra012351.1-P | Field mustard | cytosol | 71.05 | 74.44 |
| KRH52586 | Soybean | cytosol, nucleus | 78.82 | 71.88 |
| HORVU2Hr1G112000.1 | Barley | cytosol | 76.41 | 71.61 |
| HORVU3Hr1G021300.1 | Barley | cytosol, plastid | 27.08 | 61.21 |
| CDY12502 | Canola | cytosol | 51.74 | 54.67 |
| VIT_16s0100g00150.t01 | Wine grape | cytosol, extracellular, plastid | 8.85 | 49.25 |
| HORVU4Hr1G047410.2 | Barley | cytosol, mitochondrion, peroxisome | 26.27 | 38.74 |
| EES00543 | Sorghum | cytosol | 23.59 | 28.66 |
Protein Annotations
| EnsemblPlants:KXG27287 | EnsemblPlantsGene:SORBI_3006G245700 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN | ncoils:Coil | PANTHER:PTHR10410 | PANTHER:PTHR10410:SF14 |
| PFAM:PF01398 | PFscan:PS50249 | ProteinID:KXG27287 | ProteinID:KXG27287.1 | SEG:seg | SMART:SM00232 |
| SUPFAM:SSF102712 | UniParc:UPI0001C8065C | UniProt:A0A1B6PNQ1 | MapMan:19.2.3.3.1.5 | : | : |
Description
hypothetical protein
Coordinates
chr6:+:58530878..58534467
Molecular Weight (calculated)
41216.5 Da
IEP (calculated)
4.848
GRAVY (calculated)
-0.389
Length
373 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPTSSASIA RQTWELENNI PAAATDPDAM DAIYRYDDSV QARAQQEKPW ANDPHHFRRT KISALALLKM VVHARAGGTI EVMGLMQGKC EGDAIIVMDA
101: FALPVEGTET RVNAQADAYE YMVEYSTINK QAGRLENVVG WYHSHPGYGC WLSGIDVSTQ MLNQQFTEPF LAVVIDPTRT VSAGKVEIGA FRTYPKDYKP
201: PDEPVSEYQT IPLNKIEDFG VHCKSYYALD ITYFKSSLDS HLLDLLWNKY WVNTLSSSPL LGNRDYVAGQ IFDLADKLEQ AEGQLAHSRF GGMIMPSQRK
301: KEQEESPLAK VTRDSSKITA EQVHGLMSQV IKDILFNSVH PSIKASTSAP DSSSAPDSSS APDSSGPEPM VEA
101: FALPVEGTET RVNAQADAYE YMVEYSTINK QAGRLENVVG WYHSHPGYGC WLSGIDVSTQ MLNQQFTEPF LAVVIDPTRT VSAGKVEIGA FRTYPKDYKP
201: PDEPVSEYQT IPLNKIEDFG VHCKSYYALD ITYFKSSLDS HLLDLLWNKY WVNTLSSSPL LGNRDYVAGQ IFDLADKLEQ AEGQLAHSRF GGMIMPSQRK
301: KEQEESPLAK VTRDSSKITA EQVHGLMSQV IKDILFNSVH PSIKASTSAP DSSSAPDSSS APDSSGPEPM VEA
001: MEGSSSTIAR KTWELENSIL TVDSPDSTSD NIFYYDDTSQ TRFQQEKPWE NDPHYFKRVK ISALALLKMV VHARSGGTIE IMGLMQGKTD GDTIIVMDAF
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
101: ALPVEGTETR VNAQDDAYEY MVEYSQTNKL AGRLENVVGW YHSHPGYGCW LSGIDVSTQR LNQQHQEPFL AVVIDPTRTV SAGKVEIGAF RTYSKGYKPP
201: DEPVSEYQTI PLNKIEDFGV HCKQYYSLDV TYFKSSLDSH LLDLLWNKYW VNTLSSSPLL GNGDYVAGQI SDLAEKLEQA ESHLVQSRFG GVVPSSLHKK
301: KEDESQLTKI TRDSAKITVE QVHGLMSQVI KDELFNSMRQ SNNKSPTDSS DPDPMITY
Arabidopsis Description
CSN5BCOP9 signalosome complex subunit 5b [Source:UniProtKB/Swiss-Prot;Acc:Q9FVU9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.