CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033496_P001	Maize	cytosol	81.54	82.45
Zm00001d013655_P001	Maize	cytosol	74.1	75.56
TraesCS2D01G094200.1	Wheat	cytosol	68.32	72.94
TraesCS2A01G095700.1	Wheat	cytosol	68.32	72.94
TraesCS2B01G111100.1	Wheat	cytosol	67.77	72.35
Zm00001d012829_P001	Maize	cytosol	22.59	71.3
Os07t0689600-01	Rice	cytosol	66.39	70.26
HORVU2Hr1G015980.1	Barley	cytosol	65.29	69.71
GSMUA_Achr5P21100_001	Banana	cytosol	44.9	51.75
GSMUA_Achr2P00420_001	Banana	cytosol	43.8	50.32
PGSC0003DMT400007275	Potato	cytosol	38.02	43.53
Solyc01g100490.2.1	Tomato	cytosol	37.74	43.22
KRH36982	Soybean	cytosol	36.36	42.72
KRG96720	Soybean	cytosol	36.64	42.22
AT1G56430.1	Thale cress	cytosol	37.47	41.98
CDY39002	Canola	cytosol	36.64	41.3
KRH68436	Soybean	cytosol	36.36	41.12
CDY42364	Canola	cytosol	36.09	40.68
Bra038164.1-P	Field mustard	cytosol	36.09	40.56
CDX98807	Canola	cytosol	32.78	40.07
AT1G09240.1	Thale cress	cytosol	34.99	39.69
VIT_14s0060g01190.t01	Wine grape	cytosol	35.26	39.63
AT5G04950.1	Thale cress	cytosol	34.71	39.38
CDX93517	Canola	cytosol	34.71	39.01
CDX94325	Canola	cytosol	29.75	38.85
Bra009407.1-P	Field mustard	cytosol	32.78	38.76
Bra005831.1-P	Field mustard	cytosol	34.16	38.75
CDX94991	Canola	cytosol	34.44	38.7
Bra018573.1-P	Field mustard	cytosol	34.44	38.7
CDY69948	Canola	cytosol	29.48	38.49
CDY28616	Canola	cytosol	33.88	38.44
CDY06526	Canola	cytosol	33.88	38.44
AT5G56080.1	Thale cress	cytosol	33.88	38.44
Bra002851.1-P	Field mustard	cytosol	33.88	38.44
CDY11321	Canola	cytosol	33.88	38.44
Bra035602.1-P	Field mustard	cytosol	33.88	38.44
CDY64985	Canola	cytosol	33.88	38.44
CDX80931	Canola	cytosol	33.88	38.44
VIT_11s0052g01150.t01	Wine grape	plastid	30.03	38.38
CDY17383	Canola	cytosol	33.61	38.12
KRH43850	Soybean	cytosol	29.2	37.06
KXG39528	Sorghum	cytosol	61.16	36.76
KRH13614	Soybean	cytosol	28.93	36.71
CDX70180	Canola	cytosol	32.51	36.31
AT4G26483.1	Thale cress	cytosol, extracellular, plastid	8.26	35.71
CDY46596	Canola	cytosol	20.39	35.58
Bra004521.1-P	Field mustard	cytosol	14.33	28.11
GSMUA_Achr11P...	Banana	cytosol	44.08	27.07
CDY01124	Canola	cytosol	7.16	20.63
CDY09316	Canola	cytosol	5.23	18.45

Protein Annotations

MapMan:25.4.3.1.1	Gene3D:3.40.50.150	EntrezGene:8057220	UniProt:C5WR27	ncoils:Coil	EnsemblPlants:EER93732
ProteinID:EER93732	ProteinID:EER93732.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030410	GO:GO:0030418	InterPro:IPR004298
InterPro:Nicotian_synth	PFAM:PF03059	PFscan:PS51142	PANTHER:PTHR32266	PANTHER:PTHR32266:SF10	MetaCyc:PWY-5912
MetaCyc:PWY-5957	InterPro:SAM-dependent_MTases	EnsemblPlantsGene:SORBI_3001G151400	SUPFAM:SSF53335	unigene:Sbi.20298	UniParc:UPI0001A82AFE
RefSeq:XP_002466734.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:12158747..12160425

Molecular Weight (calculated)

38886.8 Da

IEP (calculated)

5.640

GRAVY (calculated)

0.096

Length

363 amino acids

Sequence
(BLAST)

001: MVVMGKEEEK HHQQQQLKEE EVQEEARVVV EPDMTADEEA LVQKISGLAA AIAKLPSLSP SPEVNALFTA LVTACIPRST VDVERLGPEL QAMRAGLIRL
101: CADAEALLEA HYSDLLAGFD NPLDHLTLFP YFSNYLLLSE LEHGLLARHV PGPPPARVAF VGSGPLPLSS LVLAARHLPA AAFDNYDICG DANDRARRLV
201: RADAALAARM AFRTSDVADV TRDLAGYDVV FLAALVGMAA EEKARVVEHL GRHMAPGAAL VVRSAHGARG FLYPVVDPEE IRRGGFDVLA VHHPEGEVIN
301: SVIIARKPVP PVDAHAVAVA AAGVGHAHAH AHGAVLSRPC LCCEMEARAH QKMEEVAVEQ LPS

Best Arabidopsis Sequence Match ( AT1G56430.1 )
(BLAST)

001: MGYCQDDQLV NKICDLYEKI SKLETLKPCE DVDTLFKQLV STCIPPNPNI DVTKMSENIQ EMRSNLIKIC GEAEGYLEHH FSSILTSFED NPLHHLNLFP
101: YYNNYLKLSK LEFDLLEQNL NGFVPRTVAF IGSGPLPLTS VVLASSHLKD SIFHNFDIDP SANMVAARLV SSDPDLSQRM FFHTVDIMDV TESLKGFDVV
201: FLAALVGMDK KEKVKVVEHL EKHMSPGALL MLRSAHGPRA FLYPIVEPCD LEGFEVLSVY HPTDEVINSI VISRKLGEDA NGVVHDHIDQ ASDLACNCSK
301: IHVIMNKKKS IIEEFAGANE EQLT

Arabidopsis Description

NAS4Probable nicotianamine synthase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7X5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.