CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038979_P001	Maize	plastid	81.27	85.26
Zm00001d009530_P001	Maize	plastid	81.54	83.62
Os05t0559350-00	Rice	plastid	76.86	77.29
TraesCS1D01G398100.1	Wheat	cytosol, plastid	70.52	72.11
HORVU1Hr1G086020.1	Barley	cytosol, plastid	72.18	71.78
TraesCS1A01G389900.1	Wheat	plastid	71.07	71.07
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	68.59	68.98
GSMUA_Achr4P15230_001	Banana	plastid	46.28	55.08
GSMUA_Achr7P25140_001	Banana	plastid	52.89	54.7
Bra023329.1-P	Field mustard	mitochondrion	21.76	46.75
VIT_04s0008g03630.t01	Wine grape	plastid	40.5	42.73
PGSC0003DMT400047758	Potato	cytosol	23.42	41.87
Bra008954.1-P	Field mustard	plastid	34.99	41.78
CDY68531	Canola	plastid	34.99	41.78
CDX69749	Canola	plastid	34.99	41.78
CDX85708	Canola	plastid	34.99	41.23
CDX91209	Canola	plastid	34.44	40.32
KRH62041	Soybean	plastid	31.13	39.37
AT5G11550.1	Thale cress	plastid	33.88	39.17
KRH52713	Soybean	mitochondrion, plastid	33.06	39.09
Solyc11g071240.1.1	Tomato	plastid	33.88	36.83
CDX78430	Canola	mitochondrion	17.36	34.81

Protein Annotations

EnsemblPlants:EES19935	EnsemblPlantsGene:SORBI_3009G229100	EntrezGene:8063581	PANTHER:PTHR22849	PANTHER:PTHR22849:SF35	ProteinID:EES19935
ProteinID:EES19935.1	RefSeq:XP_002441505.1	SEG:seg	UniParc:UPI0001A89260	UniProt:C5YVH0	MapMan:35.2

Description

hypothetical protein

Coordinates

chr9:-:56985306..56986397

Molecular Weight (calculated)

34943.1 Da

IEP (calculated)

8.394

GRAVY (calculated)

0.042

Length

363 amino acids

Sequence
(BLAST)

001: MSRAAQAGGG GAGAGGAARL KASPRALFSC GIFSTCTHPA LSPTATPNNN VVPGSGGGGG GGIKGGGGSG TPCAEASSAS PVAAEAAAAA ATPLPPQRQH
101: QRAQQRNIGP SSSSSSSSSS ASQSFTQWRL PVHHPPHASA SASGSASASG AGASGDALLS AEEKFATGEV VAALRTVERE MEAAARPVPA GVVAGVVAAV
201: REPATARLAA KVLLVVLLEE GNRETAVEAG AASAAVEAVA ASGPAGATAE RALAALELLC TAPGGAPAVR REALAAPVLA RAVEGMAGRG RECAIGVLAA
301: IYGGAGGEDG ASSSPPPPEV VKAVVAAMQG ECSARGRRKG AQLLRALQEG GRLGLAWDGV GDQ

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.