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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • mitochondrion 6
  • extracellular 1
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:extracellular, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
iPSORT:mitochondrion
MultiLoc:extracellular
Plant-mPloc:mitochondrion, plasma membrane
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra006216.1-P
Bra008801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G11550.1 Bra006216.1-P AT5G13810.1 21798944
AT5G11550.1 Bra008801.1-P AT5G13810.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX85708 Canola plastid 100.0 54.87
CDX91209 Canola plastid 98.82 53.87
Bra008954.1-P Field mustard plastid 92.9 51.64
AT5G11550.1 Thale cress plastid 93.49 50.32
PGSC0003DMT400047758 Potato cytosol 56.21 46.8
KRH62041 Soybean plastid 58.58 34.49
KRH52713 Soybean mitochondrion, plastid 59.17 32.57
VIT_04s0008g03630.t01 Wine grape plastid 59.76 29.36
Solyc11g071240.1.1 Tomato plastid 57.4 29.04
GSMUA_Achr4P15230_001 Banana plastid 49.7 27.54
GSMUA_Achr7P25140_001 Banana plastid 51.48 24.79
Zm00001d009530_P001 Maize plastid 47.34 22.6
Zm00001d038979_P001 Maize plastid 46.15 22.54
Os05t0559350-00 Rice plastid 47.93 22.44
TraesCS1D01G398100.1 Wheat cytosol, plastid 46.75 22.25
EES19935 Sorghum plastid 46.75 21.76
TraesCS1A01G389900.1 Wheat plastid 46.75 21.76
TraesCS1B01G418000.1 Wheat mitochondrion, plastid 46.15 21.61
HORVU1Hr1G086020.1 Barley cytosol, plastid 46.15 21.37
Protein Annotations
EnsemblPlants:Bra023329.1EnsemblPlants:Bra023329.1-PEnsemblPlantsGene:Bra023329PANTHER:PTHR22849PANTHER:PTHR22849:SF35SEG:seg
UniParc:UPI0002543347UniProt:M4E3H7MapMan:35.2:::
Description
AT5G11550 (E=6e-050) | binding
Coordinates
chrA02:-:2871775..2872284
Molecular Weight (calculated)
17652.6 Da
IEP (calculated)
8.643
GRAVY (calculated)
0.263
Length
169 amino acids
Sequence
(BLAST)
001: MRGLVSCLRG NRIVTAKYVT KILLALCLAE GNRRVAVEAG AARAVVETAA GLENSAVERA LAALELMCTT AEGAAEVRAH AMTVPAMVAV MARLAGRGRE
101: YAISILAVVY GRGGAFSGEE ITVAPAEEVA RAVALALEGE CTARGRRKGA HLLKTLEEYG RLDLSQNGT
Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)
001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT
Arabidopsis Description
ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.