CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	CDX70521	AT5G13810.1	21798944
AT5G11550.1	CDX78539	AT5G13810.1	21798944
AT5G11550.1	CDY67732	AT5G13810.1	21798944
AT5G11550.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023329.1-P	Field mustard	mitochondrion	53.87	98.82
CDX85708	Canola	plastid	98.06	98.7
CDX69749	Canola	plastid	89.03	90.79
AT5G11550.1	Thale cress	plastid	91.61	90.45
CDY68531	Canola	plastid	88.39	90.13
CDX78430	Canola	mitochondrion	46.45	79.56
KRH52713	Soybean	mitochondrion, plastid	52.9	53.42
KRH62041	Soybean	plastid	47.42	51.22
PGSC0003DMT400047758	Potato	cytosol	33.23	50.74
VIT_04s0008g03630.t01	Wine grape	plastid	53.87	48.55
Solyc11g071240.1.1	Tomato	plastid	50.32	46.71
GSMUA_Achr4P15230_001	Banana	plastid	45.16	45.9
GSMUA_Achr7P25140_001	Banana	plastid	49.68	43.87
Zm00001d038979_P001	Maize	plastid	39.68	35.55
Zm00001d009530_P001	Maize	plastid	40.32	35.31
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	40.32	34.63
EES19935	Sorghum	plastid	40.32	34.44
Os05t0559350-00	Rice	plastid	40.0	34.35
TraesCS1D01G398100.1	Wheat	cytosol, plastid	38.71	33.8
HORVU1Hr1G086020.1	Barley	cytosol, plastid	39.68	33.7
TraesCS1A01G389900.1	Wheat	plastid	38.71	33.06

Protein Annotations

EnsemblPlants:CDX91209	EnsemblPlantsGene:GSBRNA2T00152024001	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-type_fold	PANTHER:PTHR22849
PANTHER:PTHR22849:SF35	ProteinID:CDX91209	ProteinID:CDX91209.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0004EEE821
MapMan:35.2	:	:	:	:	:

Description

BnaC02g03880D

Coordinates

chrLK031865:+:1396301..1397233

Molecular Weight (calculated)

33052.8 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.138

Length

310 amino acids

Sequence
(BLAST)

001: MMRANQKPKP NAPPRPLFSC GFFRRCTQSV LSPTSPHQQP RRKPNTATTS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPAPARPPP LPVATTLQET
101: YQIAELHLAS VSESDKLLAL QLLERVVVPD PPSDPTCPPG LMRGLVSCLR SNRIVTAKYV TKILLALCLA ECNRRVAVEA GAARAVVETA AGLENSAVER
201: ALAALELMCT TAEGAAEVRA HAMTVPAMVA VMARLAGRGR EYAISILAVV YGRGGAFSGE EITVAPAEEV ARAVALALEG ECTARGRRKG AHLLKTLEEY
301: GRLDLSQNGT

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.