Factsheet for Solyc11g071240.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g078380.1.1
Solyc11g005270.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	Solyc03g078380.1.1	AT5G13810.1	21798944
AT5G11550.1	Solyc11g005270.1.1	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400047758	Potato	cytosol	55.99	92.12
Bra023329.1-P	Field mustard	mitochondrion	29.04	57.4
KRH52713	Soybean	mitochondrion, plastid	50.6	55.05
VIT_04s0008g03630.t01	Wine grape	plastid	53.89	52.33
CDX85708	Canola	plastid	46.41	50.32
CDX91209	Canola	plastid	46.71	50.32
Bra008954.1-P	Field mustard	plastid	45.51	50.0
CDX69749	Canola	plastid	45.51	50.0
CDY68531	Canola	plastid	45.51	50.0
AT5G11550.1	Thale cress	plastid	46.41	49.36
KRH62041	Soybean	plastid	41.32	48.08
CDX78430	Canola	mitochondrion	25.45	46.96
GSMUA_Achr7P25140_001	Banana	plastid	45.21	43.02
GSMUA_Achr4P15230_001	Banana	plastid	39.22	42.95
Zm00001d038979_P001	Maize	plastid	37.72	36.42
Zm00001d009530_P001	Maize	plastid	37.43	35.31
Os05t0559350-00	Rice	plastid	37.43	34.63
TraesCS1D01G398100.1	Wheat	cytosol, plastid	36.53	34.37
TraesCS1A01G389900.1	Wheat	plastid	37.13	34.16
EES19935	Sorghum	plastid	36.83	33.88
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	36.53	33.8
HORVU1Hr1G086020.1	Barley	cytosol, plastid	36.83	33.7

Protein Annotations

EnsemblPlants:Solyc11g071240.1.1	EnsemblPlantsGene:Solyc11g071240.1	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR22849	PANTHER:PTHR22849:SF35	SEG:seg	SUPFAM:SSF48371
UniParc:UPI000276955F	UniProt:K4DAI1	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr11:+:54774080..54775706

Molecular Weight (calculated)

35641.9 Da

IEP (calculated)

6.778

GRAVY (calculated)

-0.056

Length

334 amino acids

Sequence
(BLAST)

001: MKTHHHHPKL KTSFSCGFFR RCTQSVLSPT TTTPPTLPIP LSDQTPSPLP APATAPASSS ESSSSSNTNS QSFTQWRFPL PSSPPISHTN IYPRETMQIT
101: KIAPPVLYTN LEELFHVAEL QLTSGTNLDK VKAMYLLEHS LVPNPVAAVD GGGNLVACPD TVLRGVVGCL KDRRIAKSAS KVLLALCLSE NNRHVAVEVG
201: AVGAVVDILS DLDVAAAERS LAALELLCTV AEGAEEVRVH ALAVPMMVEV MGRMDGSRGK EYAISVLAVI YGGACDGAPL AAPPEEVARA VMLALQGDCS
301: ARGRRKGAQL LKILQNYGRP DPTREEEEPE PRVV

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.