Factsheet for PGSC0003DMT400047758

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015465
PGSC0003DMT400047487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	PGSC0003DMT400015465	AT5G13810.1	21798944
AT5G11550.1	PGSC0003DMT400047487	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023329.1-P	Field mustard	mitochondrion	46.8	56.21
Solyc11g071240.1.1	Tomato	plastid	92.12	55.99
KRH62041	Soybean	plastid	53.2	37.63
KRH52713	Soybean	mitochondrion, plastid	53.69	35.5
VIT_04s0008g03630.t01	Wine grape	plastid	57.64	34.01
CDY68531	Canola	plastid	50.25	33.55
CDX85708	Canola	plastid	50.74	33.44
CDX91209	Canola	plastid	50.74	33.23
Bra008954.1-P	Field mustard	plastid	49.75	33.22
CDX69749	Canola	plastid	49.75	33.22
AT5G11550.1	Thale cress	plastid	50.25	32.48
GSMUA_Achr4P15230_001	Banana	plastid	43.84	29.18
GSMUA_Achr7P25140_001	Banana	plastid	47.29	27.35
Zm00001d038979_P001	Maize	plastid	42.36	24.86
Zm00001d009530_P001	Maize	plastid	41.87	24.01
TraesCS1D01G398100.1	Wheat	cytosol, plastid	41.87	23.94
TraesCS1A01G389900.1	Wheat	plastid	42.36	23.69
Os05t0559350-00	Rice	plastid	41.87	23.55
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	41.87	23.55
EES19935	Sorghum	plastid	41.87	23.42
HORVU1Hr1G086020.1	Barley	cytosol, plastid	41.87	23.29
CDX78430	Canola	mitochondrion	17.24	19.34

Protein Annotations

EnsemblPlants:PGSC0003DMT400047758	EnsemblPlantsGene:PGSC0003DMG400018564	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR22849	PANTHER:PTHR22849:SF35	PGSC:PGSC0003DMG400018564	SEG:seg
SUPFAM:SSF48371	UniParc:UPI0002963C82	UniProt:M1BLD6	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400018564]

Coordinates

chr11:+:42582798..42583600

Molecular Weight (calculated)

21299.8 Da

IEP (calculated)

4.818

GRAVY (calculated)

0.092

Length

203 amino acids

Sequence
(BLAST)

001: MYLLEHSLVP NPVAAVDGGG NSVACPDTVL RGVVGCLKDR RVAKSASKVL LALCLSENNR HVAVEVGAVG VVVDSLSDLD VAAAERSLAA LELLCTMAEG
101: AEEVRDHALA VPMMVEVMGR MDGSRGKEYA ISVLAVIYGG ACDGAPLAAP PEEVARAVML ALQGDCSARG RRKGAQLLKI LQNHGRPDPT RDEEEPEPEP
201: RVV

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.