CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70521
CDX78539
CDY67732
CDY70634

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	CDX70521	AT5G13810.1	21798944
AT5G11550.1	CDX78539	AT5G13810.1	21798944
AT5G11550.1	CDY67732	AT5G13810.1	21798944
AT5G11550.1	CDY70634	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023329.1-P	Field mustard	mitochondrion	54.87	100.0
CDX91209	Canola	plastid	98.7	98.06
CDX69749	Canola	plastid	89.29	90.46
CDY68531	Canola	plastid	88.64	89.8
AT5G11550.1	Thale cress	plastid	91.23	89.49
CDX78430	Canola	mitochondrion	46.1	78.45
KRH52713	Soybean	mitochondrion, plastid	52.92	53.09
KRH62041	Soybean	plastid	47.4	50.87
PGSC0003DMT400047758	Potato	cytosol	33.44	50.74
VIT_04s0008g03630.t01	Wine grape	plastid	54.55	48.84
Solyc11g071240.1.1	Tomato	plastid	50.32	46.41
GSMUA_Achr4P15230_001	Banana	plastid	45.13	45.57
GSMUA_Achr7P25140_001	Banana	plastid	50.0	43.87
Zm00001d038979_P001	Maize	plastid	40.58	36.13
Zm00001d009530_P001	Maize	plastid	41.23	35.88
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	41.23	35.18
EES19935	Sorghum	plastid	41.23	34.99
Os05t0559350-00	Rice	plastid	40.91	34.9
TraesCS1D01G398100.1	Wheat	cytosol, plastid	39.94	34.65
HORVU1Hr1G086020.1	Barley	cytosol, plastid	40.26	33.97
TraesCS1A01G389900.1	Wheat	plastid	39.61	33.61

Protein Annotations

EnsemblPlants:CDX85708	EnsemblPlantsGene:GSBRNA2T00143452001	PANTHER:PTHR22849	PANTHER:PTHR22849:SF35	ProteinID:CDX85708	ProteinID:CDX85708.1
SEG:seg	UniParc:UPI0004EE35C1	MapMan:35.2	:	:	:

Description

BnaA02g01050D

Coordinates

chrLK031842:+:1353051..1355329

Molecular Weight (calculated)

32737.4 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.129

Length

308 amino acids

Sequence
(BLAST)

001: MMRANQKPKP NAPPRPLFSC GFFRRCTQSV LSPTSPHQQP RRKPATTSSS SSSSTSTSQS FTQWRFPHHV DQTPSTAPPP PAPARPPPLP VATTLQETYQ
101: IAELHLASVS ESDKLLALQL LERVVVPDPS SDPTCPPGLM RGLVSCLRGN RIVTAKYVTK ILLALCLAEG NRRVAVEAGA ARAVVETAAG LENSAVERAL
201: AALELMCTTA EGAAEVRAHA MTVPAMVAVM ARLAGRGREY AISILAVVYG RGGAFSGEEI TVAPAEEVAR AVALALEGEC TARGRRKGAH LLKTLEEYGR
301: LDLSQNGT

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.