CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13399
KRH20755
KRH62918

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11550.1	KRH13399	AT5G13810.1	21798944
AT5G11550.1	KRH20755	AT5G13810.1	21798944
AT5G11550.1	KRH62918	AT5G13810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52713	Soybean	mitochondrion, plastid	82.58	77.2
Bra023329.1-P	Field mustard	mitochondrion	34.49	58.58
PGSC0003DMT400047758	Potato	cytosol	37.63	53.2
CDX69749	Canola	plastid	50.52	47.7
CDY68531	Canola	plastid	50.52	47.7
CDX91209	Canola	plastid	51.22	47.42
CDX85708	Canola	plastid	50.87	47.4
Bra008954.1-P	Field mustard	plastid	50.17	47.37
AT5G11550.1	Thale cress	plastid	50.52	46.18
VIT_04s0008g03630.t01	Wine grape	plastid	50.52	42.15
Solyc11g071240.1.1	Tomato	plastid	48.08	41.32
GSMUA_Achr4P15230_001	Banana	plastid	43.9	41.31
CDX78430	Canola	mitochondrion	25.78	40.88
GSMUA_Achr7P25140_001	Banana	plastid	44.6	36.47
Zm00001d009530_P001	Maize	plastid	40.07	32.49
Zm00001d038979_P001	Maize	plastid	38.68	32.08
EES19935	Sorghum	plastid	39.37	31.13
TraesCS1D01G398100.1	Wheat	cytosol, plastid	37.63	30.42
Os05t0559350-00	Rice	plastid	37.98	30.19
TraesCS1A01G389900.1	Wheat	plastid	37.63	29.75
HORVU1Hr1G086020.1	Barley	cytosol, plastid	37.63	29.59
TraesCS1B01G418000.1	Wheat	mitochondrion, plastid	36.93	29.36

Protein Annotations

EMBL:ACUP02002212	EnsemblPlants:KRH62041	EnsemblPlantsGene:GLYMA_04G081900	EntrezGene:100812542	Gene3D:1.25.10.10	GO:GO:0003674
GO:GO:0005488	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:IPR011989	PANTHER:PTHR22849	PANTHER:PTHR22849:SF35
ProteinID:KRH62041	ProteinID:KRH62041.1	SEG:seg	SUPFAM:SSF48371	UniParc:UPI0002339C6E	UniProt:K7KIV7
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:6912966..6913829

Molecular Weight (calculated)

30213.7 Da

IEP (calculated)

5.624

GRAVY (calculated)

-0.292

Length

287 amino acids

Sequence
(BLAST)

001: MGRSSGTGAK TSSAPTAPPL LPFQCESSTS SSSATSQSFT QWRFSPPTPN TTTNNNNNNL IQTNTNPPSP PPPPQIHNLQ ELFHISEFQL STDPTSALNL
101: LERSLVPNPP QEQPPCPPNL MRALTANLAQ AKPATKILFA LCLSDANRRV AVEAGAVSAV VEAAPDLDGA PAERALAALE LMCTLPEGAE ELRAHALAVP
201: VMVTMMAKTA ARGKEYAIGA LAVVYGAAGA ENHYTAPPEE VARAVELALQ GECSARGRRK GTQLLKTLQQ LSQAEIEASE THAHDGN

Best Arabidopsis Sequence Match ( AT5G11550.1 )
(BLAST)

001: MMKANQKPKP HAPPRPLFSC GFFRRCTQSV LSPTSPHQQQ PRRKATTTSS SSSSSSTSTS QSFTQWRFPH HLDQTPSTAP PPPHPPPPPP PLPVTTTLQE
101: TFQIAELHLT SVSESDKLLA LQLLERVVVP DPPSDPTCPP GLMRGLVSCL RSNNKIVTAK YVTKILLALC LAEGNRHVAV EAGAARAVVE TAAGLEISAV
201: ERALAALELM CTTAEGAAEV RAHAMTVPAM VAVMARLAGR GREYAISILS VVYGKGGEGG DSGEEIAVAP AEEVARAVAL ALEGECTARG KRKGAQLLKT
301: LEEYGRLDLS QNGT

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYD7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.